diff abims_anova.xml @ 5:e2c81089af0d draft

planemo upload commit a7485d1c72ab7a04cb1bcb8f580d7b1f4655e7f4-dirty

--- a/abims_anova.xml	Wed Mar 30 04:45:48 2016 -0400
+++ b/abims_anova.xml	Wed Mar 30 08:35:42 2016 -0400
@@ -11,7 +11,7 @@
         <exit_code range="1:" level="fatal" />
     </stdio>
 
-    <command interpreter="Rscript">
+    <command interpreter="Rscript"><![CDATA[
 abims_anova.r file "$input" sampleinfo "$sampleinfo" mode "$mode" 
 condition "c('$condition_1'
 #for $i, $s in enumerate( $conditions )
@@ -19,7 +19,7 @@
 #end for
 )"
 interaction $interaction method $method threshold $threshold selection_method $selection_method sep "$sep" dec "$dec" outputdatapvalue $dataMatrixPValue outputdatafiltered $dataMatrixFiltered
-    </command> 
+    ]]></command> 
 
     <inputs>
         <param name="input" type="data" label="Data Matrix file" format="tabular" help="Matrix of numeric data with headers." />
@@ -92,7 +92,7 @@
         </test>
     </tests>
 
-    <help>
+    <help><![CDATA[
 
 .. class:: infomark
 
@@ -248,7 +248,7 @@
 
 .. image:: anova_workflow.png
 
-    </help>
+    ]]></help>
 
     <citations>
         <citation>Ronald A. Fisher in the 1930s</citation>