Mercurial > repos > lecorguille > camera_annotate

comparison macros.xml @ 25:4b9ab71be05e draft

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planemo upload commit cfad09eb4dd6b1439b7de6a0852cd8fa22210f58
author workflow4metabolomics
date Mon, 11 Sep 2023 22:40:34 +0000
parents 512c2b701d96
children
comparison
equal deleted inserted replaced
24:512c2b701d96 25:4b9ab71be05e
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3
4 <token name="@TOOL_VERSION@">1.48.0</token> 3 <token name="@TOOL_VERSION@">1.48.0</token>
4 <token name="@VERSION_SUFFIX@">1</token>
5 <xml name="requirements"> 5 <xml name="requirements">
6 <requirements> 6 <requirements>
7 <requirement type="package" version="0.4_3">r-snow</requirement> 7 <requirement type="package" version="0.4_3">r-snow</requirement>
8 <requirement type="package" version="1.2.6">bioconductor-genomeinfodbdata</requirement> 8 <requirement type="package" version="1.2.6">bioconductor-genomeinfodbdata</requirement>
9 <requirement type="package" version="@TOOL_VERSION@">bioconductor-camera</requirement> 9 <requirement type="package" version="@TOOL_VERSION@">bioconductor-camera</requirement>
24 <!-- raw file load for planemo test --> 24 <!-- raw file load for planemo test -->
25 <token name="@COMMAND_FILE_LOAD@"> 25 <token name="@COMMAND_FILE_LOAD@">
26 #if $file_load_section.file_load_conditional.file_load_select == "yes": 26 #if $file_load_section.file_load_conditional.file_load_select == "yes":
27 #if $file_load_section.file_load_conditional.input[0].is_of_type("mzxml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzdata") or $file_load_section.file_load_conditional.input[0].is_of_type("netcdf"): 27 #if $file_load_section.file_load_conditional.input[0].is_of_type("mzxml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzml") or $file_load_section.file_load_conditional.input[0].is_of_type("mzdata") or $file_load_section.file_load_conditional.input[0].is_of_type("netcdf"):
28 #set singlefile_galaxyPath = ','.join( [ str( $single_file ) for $single_file in $file_load_section.file_load_conditional.input ] ) 28 #set singlefile_galaxyPath = ','.join( [ str( $single_file ) for $single_file in $file_load_section.file_load_conditional.input ] )
29 #set singlefile_sampleName = ','.join( [ str( $single_file.name ) for $single_file in $file_load_section.file_load_conditional.input ] ) 29 #set singlefile_sampleName = ','.join( [ str( $single_file.element_identifier ) for $single_file in $file_load_section.file_load_conditional.input ] )
30 singlefile_galaxyPath '$singlefile_galaxyPath' singlefile_sampleName '$singlefile_sampleName' 30 singlefile_galaxyPath '$singlefile_galaxyPath' singlefile_sampleName '$singlefile_sampleName'
31 #else 31 #else
32 zipfile '$file_load_section.file_load_conditional.input' 32 zipfile '$file_load_section.file_load_conditional.input'
33 #end if 33 #end if
34 #end if 34 #end if