Mercurial > repos > lecorguille > camera_annotate
comparison abims_CAMERA_annotateDiffreport.xml @ 16:a2c49996603e draft
planemo upload commit e440674afa3e58c46100b0ac7c305a6f46ecbbdc
author | lecorguille |
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date | Wed, 19 Sep 2018 03:22:21 -0400 |
parents | 6139bfcc95cb |
children | 73d82de36369 |
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15:6139bfcc95cb | 16:a2c49996603e |
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1 <tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.2"> | 1 <tool id="abims_CAMERA_annotateDiffreport" name="CAMERA.annotate" version="2.2.3"> |
2 | 2 |
3 <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description> | 3 <description>CAMERA annotate function. Returns annotation results (isotope peaks, adducts and fragments) and a diffreport if more than one condition.</description> |
4 | 4 |
5 <macros> | 5 <macros> |
6 <import>macros.xml</import> | 6 <import>macros.xml</import> |
189 <discover_datasets pattern="__designation_and_ext__" directory="tabular" visible="true" /> | 189 <discover_datasets pattern="__designation_and_ext__" directory="tabular" visible="true" /> |
190 </data> | 190 </data> |
191 </outputs> | 191 </outputs> |
192 | 192 |
193 <tests> | 193 <tests> |
194 <test> | 194 <!--<test> |
195 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/> | 195 <param name="image" value="faahKO.xset.group.retcor.group.fillpeaks.RData"/> |
196 <expand macro="test_annotate_diffreport"/> | 196 <expand macro="test_annotate_diffreport"/> |
197 <expand macro="test_annotate_quick_true"/> | 197 <expand macro="test_annotate_quick_true"/> |
198 <expand macro="test_file_load_zip"/> | 198 <expand macro="test_file_load_zip"/> |
199 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> | 199 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> |
200 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> | 200 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> |
201 </test> | 201 </test>--> |
202 <test> | 202 <test> |
203 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> | 203 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> |
204 <expand macro="test_annotate_diffreport"/> | 204 <expand macro="test_annotate_diffreport"/> |
205 <expand macro="test_annotate_quick_true"/> | 205 <expand macro="test_annotate_quick_true"/> |
206 <expand macro="test_file_load_single"/> | 206 <expand macro="test_file_load_single"/> |
207 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> | 207 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata.tsv" /> |
208 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> | 208 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix.tsv" /> |
209 </test> | |
210 <test> | |
211 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData"/> | |
212 <expand macro="test_annotate_diffreport"/> | |
213 <expand macro="test_annotate_quick_true"/> | |
214 <expand macro="test_file_load_single"/> | |
215 <output name="variableMetadata" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.variableMetadata-xcms3.tsv" /> | |
216 <output name="datamatrix" file="faahKO.xset.group.retcor.group.fillPeaks.annotate.dataMatrix-xcms3.tsv" /> | |
209 </test> | 217 </test> |
210 <test> | 218 <test> |
211 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> | 219 <param name="image" value="faahKO-single.xset.merged.group.retcor.group.fillpeaks.RData"/> |
212 <expand macro="test_annotate_diffreport"/> | 220 <expand macro="test_annotate_diffreport"/> |
213 <conditional name="quick_block"> | 221 <conditional name="quick_block"> |
422 --------------------------------------------------- | 430 --------------------------------------------------- |
423 | 431 |
424 Changelog/News | 432 Changelog/News |
425 -------------- | 433 -------------- |
426 | 434 |
435 **Version 2.2.3 - 30/04/2018** | |
436 | |
437 - NEW: support the new xcms 3.0.0 wrapper | |
438 | |
427 **Version 2.2.2 - 01/03/2018** | 439 **Version 2.2.2 - 01/03/2018** |
428 | 440 |
429 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0 | 441 - UPGRADE: upgrate the CAMERA version from 1.26.0 to 1.32.0 |
430 | 442 |
431 **Version 2.2.1 - 29/11/2017** | 443 **Version 2.2.1 - 29/11/2017** |