Mercurial > repos > lecorguille > camera_annotate
comparison test-data/CMD.mac.sh @ 16:a2c49996603e draft
planemo upload commit e440674afa3e58c46100b0ac7c305a6f46ecbbdc
| author | lecorguille |
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| date | Wed, 19 Sep 2018 03:22:21 -0400 |
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| 15:6139bfcc95cb | 16:a2c49996603e |
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| 1 LC_ALL=C Rscript ../CAMERA.r xfunction annotatediff image 'faahKO-single.xset.merged.group.retcor.group.fillpeaks-xcms3.RData' nSlaves ${GALAXY_SLOTS:-1} variableMetadataOutput variableMetadataOutput.txt dataMatrixOutput dataMatrixOutput.txt sigma 6 perfwhm 0.6 ppm 5 mzabs 0.015 maxcharge 3 maxiso 4 minfrac 0.5 quick TRUE xsetRdataOutput '/tmp/tmpT41cRC/files/000/dataset_20.dat' runDiffreport TRUE eicmax 200 eicwidth 200 value into sortpval FALSE h 480 w 640 mzdec 2 convertRTMinute TRUE numDigitsMZ 4 numDigitsRT 1 intval into singlefile_galaxyPath 'wt15.CDF,ko16.CDF,ko15.CDF,wt16.CDF' singlefile_sampleName 'wt15.CDF,ko16.CDF,ko15.CDF,wt16.CDF' |