diff planemo_test.sh @ 9:7da9252dd983 draft

planemo upload commit 9d47e3b467dbbe0af0d90a937c5e9f2c4b958c4b

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/planemo_test.sh	Mon Apr 25 11:06:25 2016 -0400
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+# Example of planemo command to launch test
+
+# Note: --galaxy_branch "dev" is set to deal with zip file
+
+
+# -- Use of installed package environments
+# after having installing package on a local galaxy instance
+source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
+source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-camera/1.22.0/lecorguille/package_bioconductor_camera_1_22_0/22cec61d66c2/env.sh
+planemo test --install_galaxy --galaxy_branch "dev"
+
+#All 1 test(s) executed passed.
+#abims_CAMERA_annotateDiffreport[0]: passed
+
+
+# -- Use of conda dependencies
+planemo conda_init --conda_prefix /tmp/mc
+planemo conda_install --conda_prefix /tmp/mc . 
+planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev"
+
+#All 1 test(s) executed passed.
+#abims_CAMERA_annotateDiffreport[0]: passed
+
+
+# -- Use of shed_test
+planemo shed_test --install_galaxy -t testtoolshed --galaxy_branch "dev"
+
+#All 1 test(s) executed passed.
+#testtoolshed.g2.bx.psu.edu/repos/lecorguille/camera_annotate/abims_CAMERA_annotateDiffreport/2.1.3[0]: passed