[1] Variance stabilization applied to microarray data
calibration and to the quantification of differential
expression, Wolfgang Huber, Anja von Heydebreck, Holger
Sueltmann, Annemarie Poustka, Martin Vingron; Bioinformatics
(2002) 18 Suppl1 S96-S104. [2] Parameter estimation for the
calibration and variance stabilization of microarray data,
Wolfgang Huber, Anja von Heydebreck, Holger Sueltmann,
Annemarie Poustka, and Martin Vingron; Statistical Applications
in Genetics and Molecular Biology (2003) Vol. 2 No. 1, Article
3; http://www.bepress.com/sagmb/vol2/iss1/art3.

AllClasses.R AllGenerics.R vsn2.R vsnLogLik.R justvsn.R
methods-vsnInput.R methods-vsn.R methods-vsn2.R
methods-predict.R RGList_to_NChannelSet.R meanSdPlot-methods.R
plotLikelihood.R normalize.AffyBatch.vsn.R sagmbSimulateData.R
zzz.R

Quantitative Analysis of Mass Spectrometry Data

c(person("Sebastian", "Gibb", role=c("aut", "cre"),
        email="mail@sebastiangibb.de",
        comment=c(ORCID="0000-0001-7406-4443")), person("Korbinian",
        "Strimmer", role="ths"))

A complete analysis pipeline for matrix-assisted laser
        desorption/ionization-time-of-flight (MALDI-TOF) and other
        two-dimensional mass spectrometry data. In addition to commonly
        used plotting and processing methods it includes distinctive
        features, namely baseline subtraction methods such as
        morphological filters (TopHat) or the statistics-sensitive
        non-linear iterative peak-clipping algorithm (SNIP), peak
        alignment using warping functions, handling of replicated
        measurements as well as allowing spectra with different
        resolutions.

Sebastian Gibb [aut, cre] (<https://orcid.org/0000-0001-7406-4443>),
  Korbinian Strimmer [ths]

A General-Purpose Package for Dynamic Report Generation in R

Provides a general-purpose tool for dynamic report generation in R
    using Literate Programming techniques.

evaluate (>= 0.10), highr, markdown, stringr (>= 0.6), yaml,
methods, tools

formatR, testit, digest, rgl (>= 0.95.1201), codetools,
rmarkdown, htmlwidgets (>= 0.7), webshot, tikzDevice (>= 0.10),
tinytex, xfun, reticulate (>= 1.4), JuliaCall (>= 0.11.1), png,
jpeg, xml2, httr, DBI (>= 0.4-1), showtext, tibble