Mercurial > repos > lecorguille > msnbase_readmsdata

comparison msnbase_readmsdata.xml @ 14:11ab2081bd4a draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit dff3ac53c7c305ff263e6358308db48cf9ed4e27"
author workflow4metabolomics
date Mon, 12 Apr 2021 09:35:02 +0000
parents 226fb89cacc4
children 7faf9b2d83f6
comparison
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13:226fb89cacc4 14:11ab2081bd4a
1 <tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@.2"> 1 <tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@+galaxy0">
2 <description>Imports mass-spectrometry data files</description> 2 <description>Imports mass-spectrometry data files</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <import>macros_msnbase.xml</import> 6 <import>macros_msnbase.xml</import>
45 <param name="input" value="faahKO_reduce.zip" ftype="zip" /> 45 <param name="input" value="faahKO_reduce.zip" ftype="zip" />
46 <assert_stdout> 46 <assert_stdout>
47 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> 47 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" />
48 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> 48 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" />
49 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> 49 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" />
50 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> 50 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (33 total)" />
51 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> 51 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" />
52 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> 52 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" />
53 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> 53 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" />
54 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> 54 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" />
55 </assert_stdout> 55 </assert_stdout>
59 <param name="input" value="ko15.CDF" ftype="netcdf" /> 59 <param name="input" value="ko15.CDF" ftype="netcdf" />
60 <assert_stdout> 60 <assert_stdout>
61 <has_text text="rowNames: ko15.CDF" /> 61 <has_text text="rowNames: ko15.CDF" />
62 <has_text text="ko15.CDF" /> 62 <has_text text="ko15.CDF" />
63 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> 63 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" />
64 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> 64 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (33 total)" />
65 <has_text text="ko15.CDF ko15 ." /> 65 <has_text text="ko15.CDF ko15 ." />
66 </assert_stdout> 66 </assert_stdout>
67 </test> 67 </test>
68 <!-- DISABLE FOR TRAVIS 68 <!-- DISABLE FOR TRAVIS
69 Useful to generate test-data for the further steps 69 Useful to generate test-data for the further steps
232 --------------------------------------------------- 232 ---------------------------------------------------
233 233
234 Changelog/News 234 Changelog/News
235 -------------- 235 --------------
236 236
237 .. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS 237 .. _News: https://lgatto.github.io/MSnbase/news/index.html
238
239 **Version 2.16.1+galaxy0 - 08/04/2019**
240
241 - UPGRADE: upgrade the MSnbase version from 2.8.2 to 2.16.1 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase.
238 242
239 **Version 2.8.2.1 - 30/04/2019** 243 **Version 2.8.2.1 - 30/04/2019**
240 244
241 - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. 245 - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms.
242 246