Mercurial > repos > lecorguille > msnbase_readmsdata
comparison msnbase_readmsdata.xml @ 14:11ab2081bd4a draft
"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit dff3ac53c7c305ff263e6358308db48cf9ed4e27"
author | workflow4metabolomics |
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date | Mon, 12 Apr 2021 09:35:02 +0000 |
parents | 226fb89cacc4 |
children | 7faf9b2d83f6 |
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13:226fb89cacc4 | 14:11ab2081bd4a |
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1 <tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@.2"> | 1 <tool id="msnbase_readmsdata" name="MSnbase readMSData" version="@WRAPPER_VERSION@+galaxy0"> |
2 <description>Imports mass-spectrometry data files</description> | 2 <description>Imports mass-spectrometry data files</description> |
3 | 3 |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 <import>macros_msnbase.xml</import> | 6 <import>macros_msnbase.xml</import> |
45 <param name="input" value="faahKO_reduce.zip" ftype="zip" /> | 45 <param name="input" value="faahKO_reduce.zip" ftype="zip" /> |
46 <assert_stdout> | 46 <assert_stdout> |
47 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> | 47 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> |
48 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> | 48 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> |
49 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> | 49 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> |
50 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> | 50 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (33 total)" /> |
51 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> | 51 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> |
52 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> | 52 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> |
53 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> | 53 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> |
54 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> | 54 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> |
55 </assert_stdout> | 55 </assert_stdout> |
59 <param name="input" value="ko15.CDF" ftype="netcdf" /> | 59 <param name="input" value="ko15.CDF" ftype="netcdf" /> |
60 <assert_stdout> | 60 <assert_stdout> |
61 <has_text text="rowNames: ko15.CDF" /> | 61 <has_text text="rowNames: ko15.CDF" /> |
62 <has_text text="ko15.CDF" /> | 62 <has_text text="ko15.CDF" /> |
63 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> | 63 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> |
64 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> | 64 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (33 total)" /> |
65 <has_text text="ko15.CDF ko15 ." /> | 65 <has_text text="ko15.CDF ko15 ." /> |
66 </assert_stdout> | 66 </assert_stdout> |
67 </test> | 67 </test> |
68 <!-- DISABLE FOR TRAVIS | 68 <!-- DISABLE FOR TRAVIS |
69 Useful to generate test-data for the further steps | 69 Useful to generate test-data for the further steps |
232 --------------------------------------------------- | 232 --------------------------------------------------- |
233 | 233 |
234 Changelog/News | 234 Changelog/News |
235 -------------- | 235 -------------- |
236 | 236 |
237 .. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS | 237 .. _News: https://lgatto.github.io/MSnbase/news/index.html |
238 | |
239 **Version 2.16.1+galaxy0 - 08/04/2019** | |
240 | |
241 - UPGRADE: upgrade the MSnbase version from 2.8.2 to 2.16.1 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. | |
238 | 242 |
239 **Version 2.8.2.1 - 30/04/2019** | 243 **Version 2.8.2.1 - 30/04/2019** |
240 | 244 |
241 - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. | 245 - BUGFIX: remove the pre-compute of the chromatograms which was memory consuming. Now, only xcms plot chromatogram will generate the Chromatograms. |
242 | 246 |