Mercurial > repos > lecorguille > msnbase_readmsdata
comparison msnbase_readmsdata.xml @ 8:b6ef94529e50 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 8ed93601e09e1db2fbaef5af29d58464b639f2a8
author | lecorguille |
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date | Tue, 09 Apr 2019 12:10:17 -0400 |
parents | 32c20be7002f |
children | 86a20118e743 |
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7:d7a7ef786fbe | 8:b6ef94529e50 |
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40 <param name="input" value="faahKO_reduce.zip" ftype="zip" /> | 40 <param name="input" value="faahKO_reduce.zip" ftype="zip" /> |
41 <assert_stdout> | 41 <assert_stdout> |
42 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> | 42 <has_text text="rowNames: faahKO_reduce/KO/ko15.CDF faahKO_reduce/KO/ko16.CDF" /> |
43 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> | 43 <has_text text="faahKO_reduce/WT/wt15.CDF faahKO_reduce/WT/wt16.CDF" /> |
44 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> | 44 <has_text text="featureNames: F1.S0001 F1.S0002 ... F4.S1278 (5112 total)" /> |
45 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (27 total)" /> | 45 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> |
46 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> | 46 <has_text text="faahKO_reduce/KO/ko15.CDF ko15 KO" /> |
47 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> | 47 <has_text text="faahKO_reduce/KO/ko16.CDF ko16 KO" /> |
48 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> | 48 <has_text text="faahKO_reduce/WT/wt15.CDF wt15 WT" /> |
49 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> | 49 <has_text text="faahKO_reduce/WT/wt16.CDF wt16 WT" /> |
50 </assert_stdout> | 50 </assert_stdout> |
54 <param name="input" value="ko15.CDF" ftype="netcdf" /> | 54 <param name="input" value="ko15.CDF" ftype="netcdf" /> |
55 <assert_stdout> | 55 <assert_stdout> |
56 <has_text text="rowNames: ./ko15.CDF" /> | 56 <has_text text="rowNames: ./ko15.CDF" /> |
57 <has_text text="ko15.CDF" /> | 57 <has_text text="ko15.CDF" /> |
58 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> | 58 <has_text text="featureNames: F1.S0001 F1.S0002 ... F1.S1278 (1278 total)" /> |
59 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (27 total)" /> | 59 <has_text text="fvarLabels: fileIdx spIdx ... spectrum (28 total)" /> |
60 <has_text text="./ko15.CDF ko15 ." /> | 60 <has_text text="./ko15.CDF ko15 ." /> |
61 </assert_stdout> | 61 </assert_stdout> |
62 </test> | 62 </test> |
63 <!-- DISABLE FOR TRAVIS | 63 <!-- DISABLE FOR TRAVIS |
64 Useful to generate test-data for the further steps | 64 Useful to generate test-data for the further steps |
228 --------------------------------------------------- | 228 --------------------------------------------------- |
229 | 229 |
230 Changelog/News | 230 Changelog/News |
231 -------------- | 231 -------------- |
232 | 232 |
233 .. _News: https://bioconductor.org/packages/release/bioc/news/MSnbase/NEWS | |
234 | |
235 **Version 2.8.2.0 - 08/04/2019** | |
236 | |
237 - UPGRADE: upgrade the MSnbase version from 2.4.0 to 2.8.2 (see MSnbase News_). Almost all the new features may not concern our usage of MSnbase. | |
233 | 238 |
234 **Version 2.4.0.0 - 29/03/2018** | 239 **Version 2.4.0.0 - 29/03/2018** |
235 | 240 |
236 - NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks. | 241 - NEW: a new dedicated tool to read the raw data. This function was previously included in xcms.findChromPeaks. This way, you will now be able to display TICs and BPCs before xcms.findChromPeaks. |
237 | 242 |