Mercurial > repos > lecorguille > msnbase_readmsdata
diff msnbase_readmsdata.r @ 15:7faf9b2d83f6 draft
planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 2cb157bd9a8701a3d6874e084032cbd050b8953e
author | workflow4metabolomics |
---|---|
date | Mon, 11 Sep 2023 09:24:51 +0000 |
parents | 11ab2081bd4a |
children |
line wrap: on
line diff
--- a/msnbase_readmsdata.r Mon Apr 12 09:35:02 2021 +0000 +++ b/msnbase_readmsdata.r Mon Sep 11 09:24:51 2023 +0000 @@ -11,19 +11,21 @@ #Import the different functions source_local <- function(fname) { - argv <- commandArgs(trailingOnly = FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep = "/")) + argv <- commandArgs(trailingOnly = FALSE) + base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)) + source(paste(base_dir, fname, sep = "/")) } source_local("lib.r") pkgs <- c("MSnbase", "batch") loadAndDisplayPackages(pkgs) -cat("\n\n"); +cat("\n\n") # ----- ARGUMENTS ----- cat("\tARGUMENTS INFO\n") args <- parseCommandArgs(evaluate = FALSE) #interpretation of arguments given in command line as an R list of objects -write.table(as.matrix(args), col.names = F, quote = F, sep = "\t") +write.table(as.matrix(args), col.names = FALSE, quote = FALSE, sep = "\t") cat("\n\n")