Mercurial > repos > lecorguille > msnbase_readmsdata
view macros.xml @ 3:11faa3dd548e draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e3956bf3393be5bff67b4d90f1007da00b0ec9b2-dirty
author | lecorguille |
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date | Thu, 04 Oct 2018 10:34:33 -0400 |
parents | 728ebc7ae7dd |
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<?xml version="1.0"?> <macros> <xml name="stdio"> <stdio> <exit_code range="1" level="fatal" /> </stdio> </xml> <!-- COMMAND --> <token name="@COMMAND_RSCRIPT@">LC_ALL=C Rscript $__tool_directory__/</token> <token name="@COMMAND_LOG_EXIT@"> ; return=\$?; cat 'log.txt'; sh -c "exit \$return" </token> <!-- INPUT_VALIDATORS --> <xml name="input_validator_range_integer"> <validator type="regex" message="The format is 'min,max'" >[0-9]+ *, *[0-9]+</validator> </xml> <xml name="input_validator_range_float"> <validator type="regex" message="The format is 'min,max'" >[0-9]+\.?[0-9]* *, *[0-9]+\.?[0-9]*</validator> </xml> <xml name="input_validator_list_integer"> <validator type="regex" message="The format is '1,2,4,6'" >[0-9, ]+</validator> </xml> <token name="@INPUT_IMAGE_LABEL@">RData file</token> <token name="@INPUT_IMAGE_HELP@">It contains a xcms3::XCMSnExp object (named xdata)</token> <!-- MISC --> <token name="@HELP_AUTHORS_WRAPPERS@"> .. class:: infomark **Galaxy integration** ABiMS TEAM - SU/CNRS - Station biologique de Roscoff and Yann Guitton - LABERCA Part of Workflow4Metabolomics.org [W4M] | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. </token> <xml name="citation_w4m"> <citation type="doi">10.1093/bioinformatics/btu813</citation> </xml> </macros>