Mercurial > repos > lecorguille > rdata_xcms_datatypes
changeset 0:d64562a4ebb3 draft
planemo upload
| author | lecorguille |
|---|---|
| date | Fri, 07 Aug 2015 10:44:06 -0400 |
| parents | |
| children | 544f6d2329ac |
| files | datatypes_conf.xml rdata_xcms_datatype.py |
| diffstat | 2 files changed, 57 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/datatypes_conf.xml Fri Aug 07 10:44:06 2015 -0400 @@ -0,0 +1,13 @@ +<?xml version="1.0"?> +<datatypes> + <datatype_files> + <datatype_file name="rdata_xcms_datatype.py"/> + </datatype_files> + <registration> + <datatype extension="rdata" type="galaxy.datatypes.binary:Binary" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + <datatype extension="rdata.xcms.raw" type="galaxy.datatypes.rdata_xcms_datatype:RdataXcmsRaw" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + <datatype extension="rdata.xcms.group" type="galaxy.datatypes.rdata_xcms_datatype:RdataXcmsGroup" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + <datatype extension="rdata.xcms.retcor" type="galaxy.datatypes.rdata_xcms_datatype:RdataXcmsRetcor" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + <datatype extension="rdata.xcms.fillpeaks" type="galaxy.datatypes.rdata_xcms_datatype:RdataXcmsFillpeaks" mimetype="application/x-gzip" subclass="true" display_in_upload="true" /> + </registration> +</datatypes>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rdata_xcms_datatype.py Fri Aug 07 10:44:06 2015 -0400 @@ -0,0 +1,44 @@ +# -*- coding: utf-8 -*- +""" +xcms datatypes + +Author: lecorguille@sb-roscoff.fr +""" + +import logging +import os,os.path,re +from galaxy.datatypes.data import * +from galaxy.datatypes.sniff import * +from galaxy.datatypes.binary import * + +log = logging.getLogger(__name__) + + +class RdataXcmsRaw( Binary ): + file_ext = "rdata.xcms.raw" + blurb = "Output of xcms.xcmsSet\nInput of xcms.group and xcms.retcor" + + #TODO: sniff + + +class RdataXcmsGroup( Binary ): + file_ext = "rdata.xcms.group" + blurb = "Output of xcms.group\nInput of xcms.group, xcms.retcor and xcms.fillpeaks" + + #TODO: sniff + + +class RdataXcmsRetcor( Binary ): + file_ext = "rdata.xcms.retcor" + blurb = "Output of xcms.retcor\nInput of xcms.group" + + #TODO: sniff + + +class RdataXcmsFillpeaks( Binary ): + file_ext = "rdata.xcms.fillpeaks" + blurb = "Output of xcms.fillpeaks\nInput of camera.annotate" + + #TODO: sniff + +