diff macros_xcms.xml @ 8:c684ccd89267 draft

"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"

--- a/macros_xcms.xml	Mon Apr 29 06:32:48 2019 -0400
+++ b/macros_xcms.xml	Wed Feb 12 08:27:57 2020 -0500
@@ -1,11 +1,11 @@
 <?xml version="1.0"?>
 <macros>
 
-    <token name="@WRAPPER_VERSION@">3.4.4</token>
+    <token name="@TOOL_VERSION@">3.6.1</token>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="@WRAPPER_VERSION@">bioconductor-xcms</requirement>
-            <requirement type="package" version="1.1_4">r-batch</requirement>
+            <requirement type="package" version="@TOOL_VERSION@">bioconductor-xcms</requirement>
+            <requirement type="package" version="1.1_5">r-batch</requirement>
             <requirement type="package" version="1.1_2">r-rcolorbrewer</requirement>
             <requirement type="package" version="6.0">unzip</requirement>
             <yield />
@@ -69,11 +69,11 @@
         </section>
     </xml>
 
-    <xml name="test_file_load_single_ko15">
+    <xml name="test_file_load_single_file" token_filename="">
         <section name="file_load_section">
             <conditional name="file_load_conditional">
                 <param name="file_load_select" value="yes" />
-                <param name="input" value="ko15.CDF" ftype="netcdf" />
+                <param name="input" value="@FILENAME@.CDF" ftype="netcdf" />
             </conditional>
         </section>
     </xml>
@@ -178,7 +178,7 @@
     </token>
 
     <xml name="input_centwave">
-        <param argument="ppm" type="integer" value="25" label="Max tolerated ppm m/z deviation in consecutive scans in ppm" help="for the initial ROI definition." />
+        <param argument="ppm" type="float" value="25" label="Max tolerated ppm m/z deviation in consecutive scans in ppm" help="for the initial ROI definition." />
         <param argument="peakwidth" type="text" value="20,50" label="Min,Max peak width in seconds" help="with the expected approximate peak width in chromatographic space.">
             <expand macro="input_validator_range_float"/>
         </param>
@@ -246,6 +246,17 @@
 
     </token>
 
+    <token name="@HELP_XCMS_NEWVERSION_3440@">
+**Version 3.4.4.0 - 08/02/2019**
+
+- UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
+    </token>
+    <token name="@HELP_XCMS_NEWVERSION_3610@">
+**Version 3.6.1+galaxy* - 03/09/2019**
+
+- UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News_)
+    </token>
+
     <xml name="citation">
         <citations>
             <citation type="doi">10.1021/ac051437y</citation>