Mercurial > repos > lecorguille > xcms_fillpeaks

comparison xcms_fillpeaks.r @ 21:05d322d6facb draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 8ed93601e09e1db2fbaef5af29d58464b639f2a8
author lecorguille
date Tue, 09 Apr 2019 12:23:16 -0400
parents 27fbe73c4279
children 3bc94c3abb28
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20:c0e7d2fae9ee 21:05d322d6facb
101 xset <- getxcmsSetObject(xdata) 101 xset <- getxcmsSetObject(xdata)
102 print(xset) 102 print(xset)
103 cat("\n\n") 103 cat("\n\n")
104 104
105 #saving R data in .Rdata file to save the variables used in the present tool 105 #saving R data in .Rdata file to save the variables used in the present tool
106 objects2save = c("xdata","zipfile","singlefile","md5sumList","sampleNamesList", "chromTIC", "chromBPI", "chromTIC_adjusted", "chromBPI_adjusted") 106 objects2save = c("xdata","zipfile","singlefile","md5sumList","sampleNamesList") #, "chromTIC", "chromBPI", "chromTIC_adjusted", "chromBPI_adjusted")
107 save(list=objects2save[objects2save %in% ls()], file="fillpeaks.RData") 107 save(list=objects2save[objects2save %in% ls()], file="fillpeaks.RData")
108 108
109 cat("\n\n") 109 cat("\n\n")
110 110
111 111