Mercurial > repos > lecorguille > xcms_fillpeaks
comparison abims_xcms_fillPeaks.xml @ 25:26d77e9ceb49 draft
"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit dcc90f9cf76e6980c0a7d9698c89fab826e7adae"
author | workflow4metabolomics |
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date | Wed, 07 Apr 2021 10:34:07 +0000 |
parents | 999f9db0ca2c |
children | bb9ee352fce0 |
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24:999f9db0ca2c | 25:26d77e9ceb49 |
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127 </assert_stdout> | 127 </assert_stdout> |
128 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> | 128 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> |
129 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" /> | 129 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" /> |
130 </test>--> | 130 </test>--> |
131 <test> | 131 <test> |
132 <param name="image" value="faahKO-single.xset.merged.group2.retcor2.group2.RData" ftype="rdata"/> | 132 <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.RData" ftype="rdata"/> |
133 <section name="peaklist"> | 133 <section name="peaklist"> |
134 <param name="peaklistBool" value="true" /> | 134 <param name="peaklistBool" value="true" /> |
135 <param name="convertRTMinute" value="false" /> | 135 <param name="convertRTMinute" value="false" /> |
136 <param name="numDigitsMZ" value="4" /> | 136 <param name="numDigitsMZ" value="4" /> |
137 <param name="numDigitsRT" value="1" /> | 137 <param name="numDigitsRT" value="1" /> |
139 <expand macro="test_file_load_single"/> | 139 <expand macro="test_file_load_single"/> |
140 <assert_stdout> | 140 <assert_stdout> |
141 <has_text text="expandMz: 0" /> | 141 <has_text text="expandMz: 0" /> |
142 <has_text text="expandRt: 0" /> | 142 <has_text text="expandRt: 0" /> |
143 <has_text text="object with 4 samples" /> | 143 <has_text text="object with 4 samples" /> |
144 <has_text text="Time range: 2499.4-4473.6 seconds (41.7-74.6 minutes)" /> | 144 <has_text text="Time range: 2507.6-4481.8 seconds (41.8-74.7 minutes)" /> |
145 <has_text text="Mass range: 200.1-600 m/z" /> | 145 <has_text text="Mass range: 200.1-600 m/z" /> |
146 <has_text text="Peaks: 15218 (about 3804 per sample)" /> | 146 <has_text text="Peaks: 18995 (about 4749 per sample)" /> |
147 <has_text text="Peak Groups: 6332" /> | 147 <has_text text="Peak Groups: 8209" /> |
148 <has_text text="Sample classes: KO, WT" /> | 148 <has_text text="Sample classes: KO, WT" /> |
149 </assert_stdout> | 149 </assert_stdout> |
150 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> | 150 <output name="variableMetadata" file="faahKO-single-class.xset.group.retcor.group.fillPeaks.variableMetadata.tsv" /> |
151 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.NAless.tsv" /> | 151 <output name="dataMatrix" file="faahKO-single-class.xset.group.retcor.group.fillPeaks.dataMatrix.NAless.tsv" /> |
152 </test> | 152 </test> |
153 </tests> | 153 </tests> |
154 | 154 |
155 <help><![CDATA[ | 155 <help><![CDATA[ |
156 | 156 |
228 --------------------------------------------------- | 228 --------------------------------------------------- |
229 | 229 |
230 Changelog/News | 230 Changelog/News |
231 -------------- | 231 -------------- |
232 | 232 |
233 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS | 233 @HELP_XCMS_NEWVERSION_31200@ |
234 | 234 |
235 @HELP_XCMS_NEWVERSION_3610@ | 235 @HELP_XCMS_NEWVERSION_3610@ |
236 | 236 |
237 @HELP_XCMS_NEWVERSION_3440@ | 237 @HELP_XCMS_NEWVERSION_3440@ |
238 | 238 |