Mercurial > repos > lecorguille > xcms_fillpeaks

comparison abims_xcms_fillPeaks.xml @ 18:27fbe73c4279 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
author lecorguille
date Mon, 11 Feb 2019 06:11:33 -0500
parents b6b62413936f
children fbcf5f621aa7
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17:b6b62413936f 18:27fbe73c4279
1 <tool id="abims_xcms_fillPeaks" name="xcms fillChromPeaks (fillPeaks)" version="@WRAPPER_VERSION@.2"> 1 <tool id="abims_xcms_fillPeaks" name="xcms fillChromPeaks (fillPeaks)" version="@WRAPPER_VERSION@.0">
2 2
3 <description>Integrate areas of missing peaks</description> 3 <description>Integrate areas of missing peaks</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
141 <has_text text="expandMz: 0" /> 141 <has_text text="expandMz: 0" />
142 <has_text text="expandRt: 0" /> 142 <has_text text="expandRt: 0" />
143 <has_text text="object with 4 samples" /> 143 <has_text text="object with 4 samples" />
144 <has_text text="Time range: 2499.4-4473.6 seconds (41.7-74.6 minutes)" /> 144 <has_text text="Time range: 2499.4-4473.6 seconds (41.7-74.6 minutes)" />
145 <has_text text="Mass range: 200.1-600 m/z" /> 145 <has_text text="Mass range: 200.1-600 m/z" />
146 <has_text text="Peaks: 15230 (about 3808 per sample)" /> 146 <has_text text="Peaks: 15218 (about 3804 per sample)" />
147 <has_text text="Peak Groups: 6332" /> 147 <has_text text="Peak Groups: 6332" />
148 <has_text text="Sample classes: KO, WT" /> 148 <has_text text="Sample classes: KO, WT" />
149 </assert_stdout> 149 </assert_stdout>
150 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> 150 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" />
151 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.NAless.tsv" /> 151 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.NAless.tsv" />
228 --------------------------------------------------- 228 ---------------------------------------------------
229 229
230 Changelog/News 230 Changelog/News
231 -------------- 231 --------------
232 232
233 **Version 3.4.3.0 - 08/02/2019**
234
235 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.3
236
237 - BUGFIX: issue with Inf values in the exported DataMatrix: https://github.com/sneumann/xcms/issues/323#issuecomment-433044378
238
239
233 **Version 3.0.0.2 - 09/11/2018** 240 **Version 3.0.0.2 - 09/11/2018**
234 241
235 - BUGFIX: issue when the vector at peakidx is too long and is written in a new line during the export of the peaklist 242 - BUGFIX: issue when the vector at peakidx is too long and is written in a new line during the export of the peaklist
236 243
237 244