comparison macros.xml @ 4:2edfa5e1f719 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 83b80dcd96b379518c2e4ace992affc889d32ca6
author lecorguille
date Fri, 08 Apr 2016 10:39:59 -0400
parents
children 465623d2f6fa
comparison
equal deleted inserted replaced
3:5a54397dbc97 4:2edfa5e1f719
1 <?xml version="1.0"?>
2 <macros>
3 <xml name="requirements">
4 <requirements>
5 <requirement type="package" version="3.1.2">R</requirement>
6 <requirement type="package" version="0.4_1">r-snow</requirement>
7 <requirement type="package" version="1.44.0">bioconductor-xcms</requirement>
8 <requirement type="package" version="1.1_4">r-batch</requirement>
9 </requirements>
10 </xml>
11 <xml name="stdio">
12 <stdio>
13 <exit_code range="1" level="fatal" />
14 </stdio>
15 </xml>
16
17 <token name="@COMMAND_XCMS_SCRIPT@">
18 LANG=C Rscript $__tool_directory__/xcms.r
19 </token>
20
21 <token name="@COMMAND_LOG_EXIT@">
22 ;
23 return=\$?;
24 mv log.txt $log;
25 cat $log;
26 sh -c "exit \$return"
27 </token>
28
29 <token name="@HELP_AUTHORS@">
30 .. class:: infomark
31
32 **Authors** Colin A. Smith csmith@scripps.edu, Ralf Tautenhahn rtautenh@gmail.com, Steffen Neumann sneumann@ipb-halle.de, Paul Benton hpaul.benton08@imperial.ac.uk and Christopher Conley cjconley@ucdavis.edu
33
34 .. class:: infomark
35
36 **Galaxy integration** ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff and Yann Guitton yann.guitton@oniris-nantes.fr - part of Workflow4Metabolomics.org [W4M]
37
38 | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool.
39
40 ---------------------------------------------------
41
42 </token>
43
44
45 <xml name="citation">
46 <citations>
47 <citation type="doi">10.1021/ac051437y</citation>
48 <citation type="doi">10.1093/bioinformatics/btu813</citation>
49 </citations>
50 </xml>
51 </macros>