comparison xcms.r @ 10:6caa60dcc217 draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 30bf079aba283d5b37a77cbd8996592ad99eca8c

9:ee29f0a6e361

  cat("\t\tGET TIC GRAPH\n")
  getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected")
  getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
}

if (thefunction == "fillPeaks") {
  cat("\t\tGET THE PEAK LIST\n")
  getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
}

10:6caa60dcc217

  cat("\t\tGET TIC GRAPH\n")
  getTICs(xcmsSet=xset, pdfname=ticspdf,rt="corrected")
  getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
}

if (thefunction == "fillPeaks" && exists("intval")) {
  cat("\t\tGET THE PEAK LIST\n")
  getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
}