Mercurial > repos > lecorguille > xcms_fillpeaks

comparison abims_xcms_fillPeaks.xml @ 12:dcb9041cb9ea draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:47:20 -0500
parents de0d85537ee3
children 91c71f3808f3
comparison
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11:de0d85537ee3 12:dcb9041cb9ea
1 <tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.0"> 1 <tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.1">
2 2
3 <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description> 3 <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
224 224
225 | Rdata file that will be used in the **CAMERA.annotate** or **xcms.summary** step of the workflow. 225 | Rdata file that will be used in the **CAMERA.annotate** or **xcms.summary** step of the workflow.
226 226
227 xset.variableMetadata.tsv : tabular format 227 xset.variableMetadata.tsv : tabular format
228 228
229 | Table containing information about ions; can be used as one input of **Quality_Metrics** or **Generic_filter* modules. 229 | Table containing information about ions; can be used as one input of **Quality_Metrics** or **Generic_filter** modules.
230 230
231 xset.dataMatrix.tsv : tabular format 231 xset.dataMatrix.tsv : tabular format
232 232
233 | Table containing ions' intensities; can be used as one input of **Quality_Metrics** or **Generic_filter* modules. 233 | Table containing ions' intensities; can be used as one input of **Quality_Metrics** or **Generic_filter** modules.
234 234
235 ------ 235 ------
236 236
237 .. class:: infomark 237 .. class:: infomark
238 238
266 --------------------------------------------------- 266 ---------------------------------------------------
267 267
268 Changelog/News 268 Changelog/News
269 -------------- 269 --------------
270 270
271 **Version 2.1.1 - 29/11/2017**
272
273 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
274
271 **Version 2.1.0 - 07/02/2017** 275 **Version 2.1.0 - 07/02/2017**
272 276
273 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom) 277 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom)
274 278
275 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data 279 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data