Mercurial > repos > lecorguille > xcms_fillpeaks
comparison abims_xcms_fillPeaks.xml @ 12:dcb9041cb9ea draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author | lecorguille |
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date | Wed, 29 Nov 2017 09:47:20 -0500 |
parents | de0d85537ee3 |
children | 91c71f3808f3 |
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11:de0d85537ee3 | 12:dcb9041cb9ea |
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1 <tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.0"> | 1 <tool id="abims_xcms_fillPeaks" name="xcms.fillPeaks" version="2.1.1"> |
2 | 2 |
3 <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description> | 3 <description>Integrate a sample's signal in regions where peak groups are not represented to create new peaks in missing areas</description> |
4 | 4 |
5 <macros> | 5 <macros> |
6 <import>macros.xml</import> | 6 <import>macros.xml</import> |
224 | 224 |
225 | Rdata file that will be used in the **CAMERA.annotate** or **xcms.summary** step of the workflow. | 225 | Rdata file that will be used in the **CAMERA.annotate** or **xcms.summary** step of the workflow. |
226 | 226 |
227 xset.variableMetadata.tsv : tabular format | 227 xset.variableMetadata.tsv : tabular format |
228 | 228 |
229 | Table containing information about ions; can be used as one input of **Quality_Metrics** or **Generic_filter* modules. | 229 | Table containing information about ions; can be used as one input of **Quality_Metrics** or **Generic_filter** modules. |
230 | 230 |
231 xset.dataMatrix.tsv : tabular format | 231 xset.dataMatrix.tsv : tabular format |
232 | 232 |
233 | Table containing ions' intensities; can be used as one input of **Quality_Metrics** or **Generic_filter* modules. | 233 | Table containing ions' intensities; can be used as one input of **Quality_Metrics** or **Generic_filter** modules. |
234 | 234 |
235 ------ | 235 ------ |
236 | 236 |
237 .. class:: infomark | 237 .. class:: infomark |
238 | 238 |
266 --------------------------------------------------- | 266 --------------------------------------------------- |
267 | 267 |
268 Changelog/News | 268 Changelog/News |
269 -------------- | 269 -------------- |
270 | 270 |
271 **Version 2.1.1 - 29/11/2017** | |
272 | |
273 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C | |
274 | |
271 **Version 2.1.0 - 07/02/2017** | 275 **Version 2.1.0 - 07/02/2017** |
272 | 276 |
273 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom) | 277 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom) |
274 | 278 |
275 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data | 279 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data |