Mercurial > repos > lecorguille > xcms_fillpeaks

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planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 2cb157bd9a8701a3d6874e084032cbd050b8953e
author workflow4metabolomics
date Mon, 11 Sep 2023 09:15:33 +0000
parents 26d77e9ceb49
children
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25:26d77e9ceb49 26:bb9ee352fce0
1
2 Changelog/News
3 --------------
4
5 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
6
7 **Version 3.12.0+galaxy* - 03/03/2020**
8
9 - UPGRADE: upgrade the xcms version from 3.6.1 to 3.12.0 (see XCMS News_)
10
11 **Version 3.6.1.0 - 03/09/2019**
12
13 - UPGRADE: upgrade the xcms version from 3.4.4 to 3.6.1 (see XCMS News_)
14
15 **Version 3.4.4.0 - 08/02/2019**
16
17 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_)
18
19 - BUGFIX: issue with Inf values in the exported DataMatrix: https://github.com/sneumann/xcms/issues/323#issuecomment-433044378
20
21 **Version 3.0.0.2 - 09/11/2018**
22
23 - BUGFIX: issue when the vector at peakidx is too long and is written in a new line during the export of the peaklist
24
25
26 **Version 3.0.0.1 - 09/10/2018**
27
28 - IMPROVEMENT: the export of the PeakList is now mandatory
29
30
31 **Version 3.0.0.0 - 08/03/2018**
32
33 - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods. Some parameters may have been renamed.
34
35 - UPDATE: since xcms 3.0.0, the selection of a method is no more needed (chrom or MSW). xcms will detect from the data the peak picking method used in findChromPeaks
36
37 - UPDATE: since xcms 3.0.0, new parameters are available: expandMz, expandRt and ppm
38
39
40 **Version 2.1.1 - 29/11/2017**
41
42 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
43
44
45 **Version 2.1.0 - 07/02/2017**
46
47 - IMPROVEMENT: change the management of the peaklist ids. The main ids remain the same as xcms generated. The export setiings now only add custom names in the variableMetadata tab (namecustom)
48
49 - IMPROVEMENT: xcms.fillpeaks can deal with merged individual data
50
51
52 **Version 2.0.8 - 22/12/2016**
53
54 - IMPROVEMENT: Add an option to export the peak list at this step without having to wait for CAMERA.annotate
55
56
57 **Version 2.0.7 - 06/07/2016**
58
59 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
60
61
62 **Version 2.0.6 - 04/04/2016**
63
64 - TEST: refactoring to pass planemo test using conda dependencies
65
66
67 **Version 2.0.5 - 10/02/2016**
68
69 - BUGFIX: better management of errors. Datasets remained green although the process failed
70
71 - UPDATE: refactoring of internal management of inputs/outputs
72
73 - UPDATE: refactoring to feed the new report tool
74
75
76 **Version 2.0.2 - 02/06/2015**
77
78 - IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
79
80 - IMPROVEMENT: parameter labels have changed to facilitate their reading.