Mercurial > repos > lecorguille > xcms_fillpeaks

comparison abims_xcms_fillPeaks.xml @ 26:bb9ee352fce0 draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 2cb157bd9a8701a3d6874e084032cbd050b8953e
author workflow4metabolomics
date Mon, 11 Sep 2023 09:15:33 +0000
parents 26d77e9ceb49
children
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25:26d77e9ceb49 26:bb9ee352fce0
1 <tool id="abims_xcms_fillPeaks" name="xcms fillChromPeaks (fillPeaks)" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="abims_xcms_fillPeaks" name="xcms fillChromPeaks (fillPeaks)" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 2
3 <description>Integrate areas of missing peaks</description> 3 <description>Integrate areas of missing peaks</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
126 <has_text text="Sample classes: KO, WT" /> 126 <has_text text="Sample classes: KO, WT" />
127 </assert_stdout> 127 </assert_stdout>
128 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" /> 128 <output name="variableMetadata" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.variableMetadata.tsv" />
129 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" /> 129 <output name="dataMatrix" file="faahKO.xset.group2.retcor2.group2.fillPeaks2.dataMatrix.tsv" />
130 </test>--> 130 </test>-->
131 <test> 131 <test expect_num_outputs="3">
132 <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.RData" ftype="rdata"/> 132 <param name="image" value="faahKO-single-class.xset.merged.group.retcor.group.RData" ftype="rdata"/>
133 <section name="peaklist"> 133 <section name="peaklist">
134 <param name="peaklistBool" value="true" /> 134 <param name="peaklistBool" value="true" />
135 <param name="convertRTMinute" value="false" /> 135 <param name="convertRTMinute" value="false" />
136 <param name="numDigitsMZ" value="4" /> 136 <param name="numDigitsMZ" value="4" />