Mercurial > repos > lecorguille > xcms_fillpeaks
diff abims_xcms_fillPeaks.xml @ 16:34fe699200ce draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 878be1bfbe93af0a140df76fa47f0a82a48189e3
author | lecorguille |
---|---|
date | Tue, 09 Oct 2018 04:42:22 -0400 |
parents | 91c71f3808f3 |
children | b6b62413936f |
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--- a/abims_xcms_fillPeaks.xml Thu Oct 04 10:38:22 2018 -0400 +++ b/abims_xcms_fillPeaks.xml Tue Oct 09 04:42:22 2018 -0400 @@ -1,4 +1,4 @@ -<tool id="abims_xcms_fillPeaks" name="xcms fillChromPeaks (fillPeaks)" version="@WRAPPER_VERSION@.0"> +<tool id="abims_xcms_fillPeaks" name="xcms fillChromPeaks (fillPeaks)" version="@WRAPPER_VERSION@.1"> <description>Integrate areas of missing peaks</description> @@ -37,7 +37,7 @@ <param argument="ppm" type="integer" value="0" label="Specifying a ppm by which the mz width of the peak region should be expanded" help="For peaks with an mz width smaller than ‘mean(c(mzmin, mzmax)) * ppm / 1e6’, the ‘mzmin’ will be replaced by ‘mean(c(mzmin, mzmax)) - (mean(c(mzmin, mzmax)) * ppm / 2 / 1e6)’ and ‘mzmax’ by ‘mean(c(mzmin, mzmax)) + (mean(c(mzmin, mzmax)) * ppm / 2 / 1e6)’. This is applied before eventually expanding the mz width using the ‘expandMz’ parameter." /> </section> - <expand macro="input_peaklist"/> + <expand macro="input_peaklist_section"/> <expand macro="input_file_load"/> @@ -130,12 +130,12 @@ </test>--> <test> <param name="image" value="faahKO-single.xset.merged.group2.retcor2.group2.RData" ftype="rdata"/> - <conditional name="peaklist"> + <section name="peaklist"> <param name="peaklistBool" value="true" /> <param name="convertRTMinute" value="false" /> <param name="numDigitsMZ" value="4" /> <param name="numDigitsRT" value="1" /> - </conditional> + </section> <expand macro="test_file_load_single"/> <assert_stdout> <has_text text="expandMz: 0" /> @@ -230,6 +230,11 @@ Changelog/News -------------- +**Version 3.0.0.1 - 09/10/2018** + +- IMPROVEMENT: the export of the PeakList is now mandatory + + **Version 3.0.0.0 - 08/03/2018** - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods. Some parameters may have been renamed.