diff xcms_fillpeaks.r @ 24:999f9db0ca2c draft

"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"

--- a/xcms_fillpeaks.r	Mon Jun 03 07:17:01 2019 -0400
+++ b/xcms_fillpeaks.r	Wed Feb 12 08:28:33 2020 -0500
@@ -53,15 +53,9 @@
 # Handle infiles
 if (!exists("singlefile")) singlefile <- NULL
 if (!exists("zipfile")) zipfile <- NULL
-rawFilePath <- getRawfilePathFromArguments(singlefile, zipfile, args)
+rawFilePath <- retrieveRawfileInTheWorkingDirectory(singlefile, zipfile, args)
 zipfile <- rawFilePath$zipfile
 singlefile <- rawFilePath$singlefile
-directory <- retrieveRawfileInTheWorkingDirectory(singlefile, zipfile)
-
-# Check some character issues
-md5sumList <- list("origin" = getMd5sum(directory))
-checkXmlStructure(directory)
-checkFilesCompatibilityWithXcms(directory)
 
 
 cat("\n\n")