Mercurial > repos > lecorguille > xcms_fillpeaks

diff abims_xcms_fillPeaks.xml @ 5:cd351af95d14 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author lecorguille
date Mon, 25 Apr 2016 11:15:12 -0400
parents 2edfa5e1f719
children 465623d2f6fa
line wrap: on
line diff
--- a/abims_xcms_fillPeaks.xml	Fri Apr 08 10:39:59 2016 -0400
+++ b/abims_xcms_fillPeaks.xml	Mon Apr 25 11:15:12 2016 -0400
@@ -41,7 +41,7 @@
     </outputs>
     
     <tests>
-        <test>
+        <!--<test>
             <param name="image" value="xset.group.retcor.group.RData"/>
             <param name="method" value="chrom"/>
             <param name="zip_file" value="sacuri_dir_root.zip"  ftype="zip" />
@@ -55,6 +55,21 @@
                     <has_text text="Sample classes: bio, blank" />
                 </assert_contents>
             </output>
+        </test>-->
+        <test>
+            <param name="image" value="faahKO.xset.group.retcor.group.RData"/>
+            <param name="method" value="chrom"/>
+            <param name="zip_file" value="faahKO_reduce.zip"  ftype="zip" />
+            <output name="log">
+                <assert_contents>
+                    <has_text text="object with 4 samples" />
+                    <has_text text="Time range: 2506-4484 seconds (41.8-74.7 minutes)" />
+                    <has_text text="Mass range: 200.1-600 m/z" />
+                    <has_text text="Peaks: 32720 (about 8180 per sample)" />
+                    <has_text text="Peak Groups: 8157" />
+                    <has_text text="Sample classes: KO, WT" />
+                </assert_contents>
+            </output>
         </test>
     </tests>