# HG changeset patch
# User lecorguille
# Date 1486458302 18000
# Node ID 6caa60dcc2170c82247dda61326332fcda364569
# Parent  ee29f0a6e36147f1545e8f4a5497040bb69814ac
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 30bf079aba283d5b37a77cbd8996592ad99eca8c

diff -r ee29f0a6e361 -r 6caa60dcc217 xcms.r
--- a/xcms.r	Mon Jan 30 08:53:48 2017 -0500
+++ b/xcms.r	Tue Feb 07 04:05:02 2017 -0500
@@ -246,7 +246,7 @@
   getBPCs(xcmsSet=xset,rt="corrected",pdfname=bicspdf)
 }
 
-if (thefunction == "fillPeaks") {
+if (thefunction == "fillPeaks" && exists("intval")) {
   cat("\t\tGET THE PEAK LIST\n")
   getPeaklistW4M(xset,intval,convertRTMinute,numDigitsMZ,numDigitsRT,variableMetadataOutput,dataMatrixOutput)
 }