Mercurial > repos > lecorguille > xcms_fillpeaks
changeset 22:6824468351ca draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
author | lecorguille |
---|---|
date | Mon, 29 Apr 2019 06:31:04 -0400 |
parents | 05d322d6facb |
children | 3bc94c3abb28 |
files | lib.r |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/lib.r Tue Apr 09 12:23:16 2019 -0400 +++ b/lib.r Mon Apr 29 06:31:04 2019 -0400 @@ -333,7 +333,7 @@ files[exists] <- sub("//","/",files[exists]) # WHAT IS ON THE FILESYSTEM - filesystem_filepaths <- system(paste0("find \"$PWD/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) + filesystem_filepaths <- system(paste0("find \"",getwd(),"/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) filesystem_filepaths <- filesystem_filepaths[grep(filepattern, filesystem_filepaths, perl=T)] # COMPARISON