Mercurial > repos > lecorguille > xcms_group
comparison abims_xcms_group.xml @ 5:0306a96cc446 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
| author | lecorguille |
|---|---|
| date | Mon, 25 Apr 2016 11:14:27 -0400 |
| parents | 2db1d1d0f131 |
| children | 5d80e7511dfb |
comparison
equal
deleted
inserted
replaced
| 4:2db1d1d0f131 | 5:0306a96cc446 |
|---|---|
| 96 <data name="rplotsPdf" format="pdf" label="${image.name[:-6]}.group.Rplots.pdf"/> | 96 <data name="rplotsPdf" format="pdf" label="${image.name[:-6]}.group.Rplots.pdf"/> |
| 97 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> | 97 <data name="log" format="txt" label="xset.log.txt" hidden="true" /> |
| 98 </outputs> | 98 </outputs> |
| 99 | 99 |
| 100 <tests> | 100 <tests> |
| 101 <test> | 101 <!--<test> |
| 102 <param name="image" value="xset.RData"/> | 102 <param name="image" value="xset.RData"/> |
| 103 <param name="methods|method" value="density"/> | 103 <param name="methods|method" value="density"/> |
| 104 <param name="methods|bw" value="5"/> | 104 <param name="methods|bw" value="5"/> |
| 105 <param name="methods|minfrac" value="0.3"/> | 105 <param name="methods|minfrac" value="0.3"/> |
| 106 <param name="methods|mzwid" value="0.01"/> | 106 <param name="methods|mzwid" value="0.01"/> |
| 114 <has_text text="Peaks: 59359 (about 14840 per sample)" /> | 114 <has_text text="Peaks: 59359 (about 14840 per sample)" /> |
| 115 <has_text text="Peak Groups: 48998" /> | 115 <has_text text="Peak Groups: 48998" /> |
| 116 <has_text text="Sample classes: bio, blank" /> | 116 <has_text text="Sample classes: bio, blank" /> |
| 117 </assert_contents> | 117 </assert_contents> |
| 118 </output> | 118 </output> |
| 119 </test>--> | |
| 120 <test> | |
| 121 <param name="image" value="faahKO.xset.RData"/> | |
| 122 <param name="methods|method" value="density"/> | |
| 123 <param name="methods|bw" value="5"/> | |
| 124 <param name="methods|minfrac" value="0.3"/> | |
| 125 <param name="methods|mzwid" value="0.01"/> | |
| 126 <param name="methods|density_options|option" value="show"/> | |
| 127 <param name="methods|density_options|max" value="50"/> | |
| 128 <output name="log"> | |
| 129 <assert_contents> | |
| 130 <has_text text="object with 4 samples" /> | |
| 131 <has_text text="Time range: 2506.1-4477.9 seconds (41.8-74.6 minutes)" /> | |
| 132 <has_text text="Mass range: 200.1-600 m/z" /> | |
| 133 <has_text text="Peaks: 9251 (about 2313 per sample)" /> | |
| 134 <has_text text="Peak Groups: 8275" /> | |
| 135 <has_text text="Sample classes: KO, WT" /> | |
| 136 </assert_contents> | |
| 137 </output> | |
| 119 </test> | 138 </test> |
| 120 <test> | 139 <!--<test> |
| 121 <param name="image" value="xset.group.retcor.RData"/> | 140 <param name="image" value="xset.group.retcor.RData"/> |
| 122 <param name="methods|method" value="density"/> | 141 <param name="methods|method" value="density"/> |
| 123 <param name="methods|bw" value="5"/> | 142 <param name="methods|bw" value="5"/> |
| 124 <param name="methods|minfrac" value="0.3"/> | 143 <param name="methods|minfrac" value="0.3"/> |
| 125 <param name="methods|mzwid" value="0.01"/> | 144 <param name="methods|mzwid" value="0.01"/> |
| 133 <has_text text="Peaks: 59359 (about 14840 per sample)" /> | 152 <has_text text="Peaks: 59359 (about 14840 per sample)" /> |
| 134 <has_text text="Peak Groups: 48958" /> | 153 <has_text text="Peak Groups: 48958" /> |
| 135 <has_text text="Sample classes: bio, blank" /> | 154 <has_text text="Sample classes: bio, blank" /> |
| 136 </assert_contents> | 155 </assert_contents> |
| 137 </output> | 156 </output> |
| 157 </test>--> | |
| 158 <test> | |
| 159 <param name="image" value="faahKO.xset.group.retcor.RData"/> | |
| 160 <param name="methods|method" value="density"/> | |
| 161 <param name="methods|bw" value="5"/> | |
| 162 <param name="methods|minfrac" value="0.3"/> | |
| 163 <param name="methods|mzwid" value="0.01"/> | |
| 164 <param name="methods|density_options|option" value="show"/> | |
| 165 <param name="methods|density_options|max" value="50"/> | |
| 166 <output name="log"> | |
| 167 <assert_contents> | |
| 168 <has_text text="object with 4 samples" /> | |
| 169 <has_text text="Time range: 2507.7-4481.7 seconds (41.8-74.7 minutes)" /> | |
| 170 <has_text text="Mass range: 200.1-600 m/z" /> | |
| 171 <has_text text="Peaks: 9251 (about 2313 per sample)" /> | |
| 172 <has_text text="Peak Groups: 8157" /> | |
| 173 <has_text text="Sample classes: KO, WT" /> | |
| 174 </assert_contents> | |
| 175 </output> | |
| 138 </test> | 176 </test> |
| 139 </tests> | 177 </tests> |
| 140 | 178 |
| 141 <help><![CDATA[ | 179 <help><![CDATA[ |
| 142 | 180 |