Mercurial > repos > lecorguille > xcms_group
comparison abims_xcms_group.xml @ 12:4c8507667cd6 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit e351a27de90aaea30ec193b9663db895bcc7d7d2
| author | lecorguille |
|---|---|
| date | Thu, 20 Jul 2017 04:14:50 -0400 |
| parents | 9e45e1c404a4 |
| children | 13558e8a4778 |
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| 11:9e45e1c404a4 | 12:4c8507667cd6 |
|---|---|
| 51 <option value="density" selected="true">density</option> | 51 <option value="density" selected="true">density</option> |
| 52 <option value="mzClust" >mzClust</option> | 52 <option value="mzClust" >mzClust</option> |
| 53 <option value="nearest" >nearest</option> | 53 <option value="nearest" >nearest</option> |
| 54 </param> | 54 </param> |
| 55 <when value="density"> | 55 <when value="density"> |
| 56 <param name="bw" type="integer" value="30" label="Bandwidth" help="[bw] bandwidth (standard deviation or half width at half maximum) of gaussian smoothing kernel to apply to the peak density chromatogram" /> | 56 <param name="bw" type="float" value="30" label="Bandwidth" help="[bw] bandwidth (standard deviation or half width at half maximum) of gaussian smoothing kernel to apply to the peak density chromatogram" /> |
| 57 <param name="minfrac" type="float" value="0.5" label="Minimum fraction of samples necessary" help="[minfrac] in at least one of the sample groups for it to be a valid group" /> | 57 <param name="minfrac" type="float" value="0.5" label="Minimum fraction of samples necessary" help="[minfrac] in at least one of the sample groups for it to be a valid group" /> |
| 58 <param name="mzwid" type="float" value="0.25" label="Width of overlapping m/z slices" help="[mzwid] to use for creating peak density chromatograms and grouping peaks across samples " /> | 58 <param name="mzwid" type="float" value="0.25" label="Width of overlapping m/z slices" help="[mzwid] to use for creating peak density chromatograms and grouping peaks across samples " /> |
| 59 <!-- | 59 <!-- |
| 60 <param name="minsamp" type="hidden" value="1" label="minsamp" help="minimum number of samples necessary in at least one of the sample groups for it to be a valid group " /> | 60 <param name="minsamp" type="hidden" value="1" label="minsamp" help="minimum number of samples necessary in at least one of the sample groups for it to be a valid group " /> |
| 61 --> | 61 --> |