Mercurial > repos > lecorguille > xcms_group

comparison abims_xcms_group.xml @ 24:761913919c21 draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
author workflow4metabolomics
date Wed, 12 Feb 2020 08:29:15 -0500
parents 63d9c5980c07
children a066b8581b97
comparison
equal deleted inserted replaced
23:fe4002ac5193 24:761913919c21
1 <tool id="abims_xcms_group" name="xcms groupChromPeaks (group)" version="@WRAPPER_VERSION@.0"> 1 <tool id="abims_xcms_group" name="xcms groupChromPeaks (group)" version="@TOOL_VERSION@+galaxy0">
2 2
3 <description>Perform the correspondence, the grouping of chromatographic peaks within and between samples.</description> 3 <description>Perform the correspondence, the grouping of chromatographic peaks within and between samples.</description>
4 4
5 <macros> 5 <macros>
6 <import>macros.xml</import> 6 <import>macros.xml</import>
218 <has_text text="bw: 5" /> 218 <has_text text="bw: 5" />
219 <has_text text="minFraction: 0.3" /> 219 <has_text text="minFraction: 0.3" />
220 <has_text text="binSize: 0.01"/> 220 <has_text text="binSize: 0.01"/>
221 <has_text text="maxFeatures: 50" /> 221 <has_text text="maxFeatures: 50" />
222 <has_text text="object with 4 samples" /> 222 <has_text text="object with 4 samples" />
223 <has_text text="Time range: 2509.2-4480.3 seconds (41.8-74.7 minutes)" /> 223 <has_text text="Time range: 2506.1-4477.9 seconds (41.8-74.6 minutes)" />
224 <has_text text="Mass range: 200.1-600 m/z" /> 224 <has_text text="Mass range: 200.1-600 m/z" />
225 <has_text text="Peaks: 9251 (about 2313 per sample)" /> 225 <has_text text="Peaks: 9251 (about 2313 per sample)" />
226 <has_text text="Peak Groups: 8209" /> 226 <has_text text="Peak Groups: 8372" />
227 <has_text text="Sample classes: KO, WT" /> 227 <has_text text="Sample classes: KO, WT" />
228 </assert_stdout> 228 </assert_stdout>
229 </test> 229 </test>
230 <!-- DISABLE FOR TRAVIS 230 <!-- DISABLE FOR TRAVIS
231 Test to test the different methods parameters 231 Test to test the different methods parameters
355 Changelog/News 355 Changelog/News
356 -------------- 356 --------------
357 357
358 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS 358 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
359 359
360 **Version 3.4.4.0 - 08/02/2019** 360 @HELP_XCMS_NEWVERSION_3610@
361 361
362 - UPGRADE: upgrade the xcms version from 3.0.0 to 3.4.4 (see XCMS News_) 362 @HELP_XCMS_NEWVERSION_3440@
363 363
364 - BUGFIX: groupChromPeaks wasn't pass to the ChromPeakDensity plots 364 - BUGFIX: groupChromPeaks wasn't pass to the ChromPeakDensity plots
365 365
366 - BUGFIX: issue with Inf values in the exported DataMatrix: https://github.com/sneumann/xcms/issues/323#issuecomment-433044378 366 - BUGFIX: issue with Inf values in the exported DataMatrix: https://github.com/sneumann/xcms/issues/323#issuecomment-433044378
367 367