Mercurial > repos > lecorguille > xcms_group

view planemo_test.sh @ 7:5c37c1d214a2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 2aff6f6ced8185ed35371d7ad637e5a44f8a250c
author lecorguille
date Mon, 04 Jul 2016 11:55:02 -0400
parents 0306a96cc446
children
line wrap: on
line source

# Example of planemo command to launch test


# -- Use of installed package environments
# after having installing package on a local galaxy instance
source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
planemo test --install_galaxy

#All 2 test(s) executed passed.
#abims_xcms_group[0]: passed
#abims_xcms_group[1]: passed


# -- Use of conda dependencies
planemo conda_init --conda_prefix /tmp/mc
planemo conda_install --conda_prefix /tmp/mc . 
planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution

#All 2 test(s) executed passed.
#abims_xcms_group[0]: passed
#abims_xcms_group[1]: passed


# -- Use of shed_test
planemo shed_test --install_galaxy  -t testtoolshed

#All 2 test(s) executed passed.
#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[0]: passed
#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[1]: passed