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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
author lecorguille
date Mon, 04 Jul 2016 08:46:02 -0400
parents 0306a96cc446
children
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# Example of planemo command to launch test


# -- Use of installed package environments
# after having installing package on a local galaxy instance
source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
planemo test --install_galaxy

#All 2 test(s) executed passed.
#abims_xcms_group[0]: passed
#abims_xcms_group[1]: passed


# -- Use of conda dependencies
planemo conda_init --conda_prefix /tmp/mc
planemo conda_install --conda_prefix /tmp/mc . 
planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution

#All 2 test(s) executed passed.
#abims_xcms_group[0]: passed
#abims_xcms_group[1]: passed


# -- Use of shed_test
planemo shed_test --install_galaxy  -t testtoolshed

#All 2 test(s) executed passed.
#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[0]: passed
#testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_group/2.0.5[1]: passed