Mercurial > repos > lecorguille > xcms_merge

comparison xcms_merge.xml @ 15:58b5a4b6e1da draft default tip

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planemo upload for repository https://github.com/workflow4metabolomics/tools-metabolomics/ commit 2cb157bd9a8701a3d6874e084032cbd050b8953e
author workflow4metabolomics
date Mon, 11 Sep 2023 09:17:38 +0000
parents 5bd125a3f3b0
children
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14:5bd125a3f3b0 15:58b5a4b6e1da
1 <tool id="xcms_merge" name="xcms findChromPeaks Merger" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="xcms_merge" name="xcms findChromPeaks Merger" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Merge xcms findChromPeaks RData into a unique file to be used by group</description> 2 <description>Merge xcms findChromPeaks RData into a unique file to be used by group</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <import>macros_xcms.xml</import> 6 <import>macros_xcms.xml</import>
49 <has_text text="Sample classes: ." /> 49 <has_text text="Sample classes: ." />
50 </assert_stdout> 50 </assert_stdout>
51 <output name="sampleMetadataOutput" file="noclass.merged.sampleMetadata.tsv" /> 51 <output name="sampleMetadataOutput" file="noclass.merged.sampleMetadata.tsv" />
52 </test> 52 </test>
53 --> 53 -->
54 <test> 54 <test expect_num_outputs="1">
55 <param name="images" value="ko15-xset.RData,ko16-xset.RData,wt15-xset.RData,wt16-xset.RData" ftype="rdata"/> 55 <param name="images" value="ko15-xset.RData,ko16-xset.RData,wt15-xset.RData,wt16-xset.RData" ftype="rdata"/>
56 <expand macro="test_file_load_single"/> 56 <expand macro="test_file_load_single"/>
57 <param name="sampleMetadata" value="sampleMetadata.tab" /> 57 <param name="sampleMetadata" value="sampleMetadata.tab" />
58 <assert_stdout> 58 <assert_stdout>
59 <has_text_matching expression="ko15\s+KO" /> 59 <has_text_matching expression="ko15\s+KO" />
166 166
167 xset.merged.RData: rdata.xcms.findchrompeaks format 167 xset.merged.RData: rdata.xcms.findchrompeaks format
168 168
169 | Rdata file that is necessary in the next step of the workflow "xcms.groupChromPeaks". 169 | Rdata file that is necessary in the next step of the workflow "xcms.groupChromPeaks".
170 170
171 @HELP_XCMS_MANUAL@
172
171 --------------------------------------------------- 173 ---------------------------------------------------
172 174
173 Changelog/News 175 Changelog/News
174 -------------- 176 --------------
175 177