Mercurial > repos > lecorguille > xcms_plot_chromatogram

comparison xcms_plot_chromatogram.xml @ 13:024974037c4e draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit dcc90f9cf76e6980c0a7d9698c89fab826e7adae"
author workflow4metabolomics
date Wed, 07 Apr 2021 12:07:49 +0000
parents 0cab69429e1e
children 8846a03995d3
comparison
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12:0cab69429e1e 13:024974037c4e
1 <tool id="xcms_plot_chromatogram" name="xcms plot chromatogram" version="@TOOL_VERSION@+galaxy2"> 1 <tool id="xcms_plot_chromatogram" name="xcms plot chromatogram" version="@TOOL_VERSION@+galaxy0">
2 <description>Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)</description> 2 <description>Plots base peak intensity chromatogram (BPI) and total ion current chromatogram (TIC) from MSnbase or xcms experiment(s)</description>
3 3
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 <import>macros_xcms.xml</import> 6 <import>macros_xcms.xml</import>
32 <data name="bpisPdf" format="pdf" label="BPIs.pdf" from_work_dir="BPIs.pdf" /> 32 <data name="bpisPdf" format="pdf" label="BPIs.pdf" from_work_dir="BPIs.pdf" />
33 </outputs> 33 </outputs>
34 34
35 <tests> 35 <tests>
36 <test> 36 <test>
37 <param name="images" value="faahKO-single.xset.merged.group.retcor.RData" ftype="rdata"/> 37 <param name="images" value="faahKO-single-class.xset.merged.group.retcor.RData" ftype="rdata"/>
38 <expand macro="test_file_load_single"/> 38 <expand macro="test_file_load_single"/>
39 <param name="sampleMetadata" value="sampleMetadata.tab" ftype="tabular"/> 39 <param name="sampleMetadata" value="sampleMetadata.tab" ftype="tabular"/>
40 <output name="ticsPdf" value="TICs.pdf" ftype="pdf" compare="sim_size" delta="5000" /> 40 <output name="ticsPdf" value="TICs.pdf" ftype="pdf" compare="sim_size" delta="5000" />
41 <output name="bpisPdf" value="BPIs.pdf" ftype="pdf" compare="sim_size" delta="5000" /> 41 <output name="bpisPdf" value="BPIs.pdf" ftype="pdf" compare="sim_size" delta="5000" />
42 </test> 42 </test>
100 --------------------------------------------------- 100 ---------------------------------------------------
101 101
102 Changelog/News 102 Changelog/News
103 -------------- 103 --------------
104 104
105 @HELP_XCMS_NEWVERSION_31200@
106
105 **Galaxy Version 3.6.1+galaxy2 - 23/09/2020** 107 **Galaxy Version 3.6.1+galaxy2 - 23/09/2020**
106 108
107 - BUGFIX: sample group colours did not match group labels. 109 - BUGFIX: sample group colours did not match group labels.
108
109 .. _News: https://bioconductor.org/packages/release/bioc/news/xcms/NEWS
110 110
111 @HELP_XCMS_NEWVERSION_3610@ 111 @HELP_XCMS_NEWVERSION_3610@
112 112
113 @HELP_XCMS_NEWVERSION_3440@ 113 @HELP_XCMS_NEWVERSION_3440@
114 114