Mercurial > repos > lecorguille > xcms_plot_chromatogram
comparison xcms_plot_chromatogram.r @ 5:7c0cc7a3c3db draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
| author | lecorguille |
|---|---|
| date | Mon, 11 Feb 2019 05:55:07 -0500 |
| parents | c749bfd3410e |
| children | 271c9d5f0d10 |
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| 4:caf45efb34bf | 5:7c0cc7a3c3db |
|---|---|
| 5 cat("\tSESSION INFO\n") | 5 cat("\tSESSION INFO\n") |
| 6 | 6 |
| 7 #Import the different functions | 7 #Import the different functions |
| 8 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } | 8 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } |
| 9 source_local("lib.r") | 9 source_local("lib.r") |
| 10 source_local("lib-xcms3.x.x.r") | |
| 11 | 10 |
| 12 pkgs <- c("xcms","batch","RColorBrewer") | 11 pkgs <- c("xcms","batch","RColorBrewer") |
| 13 loadAndDisplayPackages(pkgs) | 12 loadAndDisplayPackages(pkgs) |
| 14 cat("\n\n"); | 13 cat("\n\n"); |
| 15 | 14 |