Mercurial > repos > lecorguille > xcms_retcor

comparison README.rst @ 10:8828cba9aedd draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 9f72e947d9c241d11221cad561f3525d27231857
author lecorguille
date Tue, 18 Sep 2018 16:12:29 -0400
parents e4e0254a3c0a
children 950b97b679c6
comparison
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9:e4e0254a3c0a 10:8828cba9aedd
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2 Changelog/News 2 Changelog/News
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5 **Version 3.0.0.0 - 08/03/2018**
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7 - UPGRADE: upgrade the xcms version from 1.46.0 to 3.0.0. So refactoring of a lot of underlying codes and methods. Some parameters may have been renamed.
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9 - NEW: a bunch of new options: Obiwarp.(centerSample, response, distFun, gapInit, gapExtend, factorDiag, factorGap, localAlignment, initPenalty)
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11 - IMPROVEMENT: the advanced options are now in sections. It will allow you to access to all the parameters and to know their default values.
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13 - CHANGE: removing of the TIC and BPC plots. You can new use the dedicated tool "xcms plot chromatogram"
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4 15
5 **Version 2.1.1 - 29/11/2017** 16 **Version 2.1.1 - 29/11/2017**
6 17
7 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C 18 - BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
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9 **Version 2.1.0 - 03/02/2017** 21 **Version 2.1.0 - 03/02/2017**
10 22
11 - IMPROVEMENT: xcms.retcor can deal with merged individual data 23 - IMPROVEMENT: xcms.retcor can deal with merged individual data
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12 25
13 **Version 2.0.8 - 22/12/2016** 26 **Version 2.0.8 - 22/12/2016**
14 27
15 - BUGFIX: when having only one group (i.e. one folder of raw data) the BPC and TIC pdf files do not contain any graph 28 - BUGFIX: when having only one group (i.e. one folder of raw data) the BPC and TIC pdf files do not contain any graph
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17 **Version 2.0.7 - 06/07/2016** 31 **Version 2.0.7 - 06/07/2016**
18 32
19 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0 33 - UPGRADE: upgrate the xcms version from 1.44.0 to 1.46.0
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21 **Version 2.0.6 - 04/04/2016** 36 **Version 2.0.6 - 04/04/2016**
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23 - TEST: refactoring to pass planemo test using conda dependencies 38 - TEST: refactoring to pass planemo test using conda dependencies
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24 40
25 **Version 2.0.5 - 10/02/2016** 41 **Version 2.0.5 - 10/02/2016**
26 42
27 - BUGFIX: better management of errors. Datasets remained green although the process failed 43 - BUGFIX: better management of errors. Datasets remained green although the process failed
28 44