Mercurial > repos > lecorguille > xcms_retcor

comparison planemo_test.sh @ 4:ac93ed26e4e1 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 960f403303e1691bdd6137c46895feb333b36a82
author lecorguille
date Mon, 04 Jul 2016 08:46:17 -0400
parents 3b44991a8e05
children
comparison
equal deleted inserted replaced
3:3b44991a8e05 4:ac93ed26e4e1
1 # Example of planemo command to launch test 1 # Example of planemo command to launch test
2
3 # Note: --galaxy_branch "dev" is set to deal with zip file
4
5 2
6 # -- Use of installed package environments 3 # -- Use of installed package environments
7 # after having installing package on a local galaxy instance 4 # after having installing package on a local galaxy instance
8 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh 5 source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh
9 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh 6 source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh
10 planemo test --install_galaxy --galaxy_branch "dev" 7 planemo test --install_galaxy
11 8
12 #All 1 test(s) executed passed. 9 #All 1 test(s) executed passed.
13 #abims_xcms_retcor[0]: passed 10 #abims_xcms_retcor[0]: passed
14 11
15 12
16 # -- Use of conda dependencies 13 # -- Use of conda dependencies
17 planemo conda_init --conda_prefix /tmp/mc 14 planemo conda_init --conda_prefix /tmp/mc
18 planemo conda_install --conda_prefix /tmp/mc . 15 planemo conda_install --conda_prefix /tmp/mc .
19 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution --galaxy_branch "dev" 16 planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution
20 17
21 #All 1 test(s) executed passed. 18 #All 1 test(s) executed passed.
22 #abims_xcms_retcor[0]: passed 19 #abims_xcms_retcor[0]: passed
23 20
24 21