Mercurial > repos > lecorguille > xcms_retcor

diff xcms_retcor.r @ 22:972e76582173 draft

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"planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f1caf2a3bf23cf319a75dd12c86402555dd02617"
author workflow4metabolomics
date Wed, 12 Feb 2020 08:30:30 -0500
parents c914743e3f2f
children faf4a6b67304
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--- a/xcms_retcor.r	Tue Apr 30 04:45:06 2019 -0400
+++ b/xcms_retcor.r	Wed Feb 12 08:30:30 2020 -0500
@@ -44,10 +44,9 @@
 # Handle infiles
 if (!exists("singlefile")) singlefile <- NULL
 if (!exists("zipfile")) zipfile <- NULL
-rawFilePath <- getRawfilePathFromArguments(singlefile, zipfile, args)
+rawFilePath <- retrieveRawfileInTheWorkingDirectory(singlefile, zipfile, args)
 zipfile <- rawFilePath$zipfile
 singlefile <- rawFilePath$singlefile
-directory <- retrieveRawfileInTheWorkingDirectory(singlefile, zipfile)
 
 cat("\n\n")