Mercurial > repos > lecorguille > xcms_retcor
view macros.xml @ 3:3b44991a8e05 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 727b4a74b8e424af622dc0e2b0c910cdd020cd29
author | lecorguille |
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date | Mon, 25 Apr 2016 11:14:51 -0400 |
parents | 54cc3edfe35c |
children | ac93ed26e4e1 |
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<?xml version="1.0"?> <macros> <xml name="requirements"> <requirements> <requirement type="package" version="3.1.2">R</requirement> <requirement type="package" version="0.4_1">r-snow</requirement> <requirement type="package" version="1.44.0">bioconductor-xcms</requirement> <requirement type="package" version="1.1_4">r-batch</requirement> </requirements> </xml> <xml name="stdio"> <stdio> <exit_code range="1" level="fatal" /> </stdio> </xml> <token name="@COMMAND_XCMS_SCRIPT@"> LANG=C Rscript $__tool_directory__/xcms.r </token> <token name="@COMMAND_LOG_EXIT@"> ; return=\$?; mv log.txt $log; cat $log; sh -c "exit \$return" </token> <token name="@HELP_AUTHORS@"> .. class:: infomark **Authors** Colin A. Smith csmith@scripps.edu, Ralf Tautenhahn rtautenh@gmail.com, Steffen Neumann sneumann@ipb-halle.de, Paul Benton hpaul.benton08@imperial.ac.uk and Christopher Conley cjconley@ucdavis.edu .. class:: infomark **Galaxy integration** ABiMS TEAM - UPMC/CNRS - Station biologique de Roscoff and Yann Guitton yann.guitton@oniris-nantes.fr - part of Workflow4Metabolomics.org [W4M] | Contact support@workflow4metabolomics.org for any questions or concerns about the Galaxy implementation of this tool. --------------------------------------------------- </token> <xml name="citation"> <citations> <citation type="doi">10.1021/ac051437y</citation> <citation type="doi">10.1093/bioinformatics/btu813</citation> </citations> </xml> </macros>