changeset 9:e4e0254a3c0a draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:46:41 -0500
parents 4bfef820569b
children 8828cba9aedd
files README.rst abims_xcms_retcor.xml macros.xml
diffstat 3 files changed, 10 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/README.rst	Fri Apr 07 07:36:24 2017 -0400
+++ b/README.rst	Wed Nov 29 09:46:41 2017 -0500
@@ -2,6 +2,10 @@
 Changelog/News
 --------------
 
+**Version 2.1.1 - 29/11/2017**
+
+- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
+
 **Version 2.1.0 - 03/02/2017**
 
 - IMPROVEMENT: xcms.retcor can deal with merged individual data
@@ -34,4 +38,3 @@
 - IMPROVEMENT: new datatype/dataset formats (rdata.xcms.raw, rdata.xcms.group, rdata.xcms.retcor ...) will facilitate the sequence of tools and so avoid incompatibility errors.
 
 - IMPROVEMENT: parameter labels have changed to facilitate their reading.
-
--- a/abims_xcms_retcor.xml	Fri Apr 07 07:36:24 2017 -0400
+++ b/abims_xcms_retcor.xml	Wed Nov 29 09:46:41 2017 -0500
@@ -1,4 +1,4 @@
-<tool id="abims_xcms_retcor" name="xcms.retcor" version="2.1.0">
+<tool id="abims_xcms_retcor" name="xcms.retcor" version="2.1.1">
 
     <description>Retention Time Correction using retcor function from xcms R package </description>
 
@@ -319,6 +319,10 @@
 Changelog/News
 --------------
 
+**Version 2.1.1 - 29/11/2017**
+
+- BUGFIX: To avoid issues with accented letter in the parentFile tag of the mzXML files, we changed a hidden mechanim to LC_ALL=C
+
 **Version 2.1.0 - 03/02/2017**
 
 - IMPROVEMENT: xcms.retcor can deal with merged individual data
--- a/macros.xml	Fri Apr 07 07:36:24 2017 -0400
+++ b/macros.xml	Wed Nov 29 09:46:41 2017 -0500
@@ -19,7 +19,7 @@
     </xml>
 
     <token name="@COMMAND_XCMS_SCRIPT@">
-        LANG=C Rscript $__tool_directory__/xcms.r
+        LC_ALL=C Rscript $__tool_directory__/xcms.r
     </token>
 
     <token name="@COMMAND_LOG_EXIT@">