___ XCMS analysis summary using Workflow4Metabolomics ___

Samples used:

Function launched:

Information about the xcmsSet object:

An "xcmsSet" object with 6 samples

Time range: 16.3-1138.9 seconds (0.3-19 minutes)
Mass range: 61.9883-481.2446 m/z
Peaks: 1799 (about 300 per sample)
Peak Groups: 289 
Sample classes: bio, bio2, blank 

Profile settings: method = bin
                  step = 0.01

Memory usage: 0.421 MB

Citations:

• To cite the XCMS package in publications use:
  • Smith, C.A. and Want, E.J. and O'Maille, G. and Abagyan,R. and Siuzdak, G.XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching and identification, Analytical Chemistry, 78:779-787 (2006)
  • Ralf Tautenhahn, Christoph Boettcher, Steffen Neumann: Highly sensitive feature detection for high resolution LC/MS BMC Bioinformatics, 9:504 (2008)
  • H. Paul Benton, Elizabeth J. Want and Timothy M. D. Ebbels Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data Bioinformatics, 26:2488 (2010)
• To cite the CAMERA package in publications use:
  • Kuhl, C., Tautenhahn, R., Boettcher, C., Larson, T. R. and Neumann,S. CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets. Analytical Chemistry, 84:283-289 (2012)
• To cite the Workflow4Metabolimics (W4M) project in publications use:
  • Franck Giacomoni, Gildas Le Corguillé, Misharl Monsoor, Marion Landi, Pierre Pericard, Mélanie Pétéra, Christophe Duperier, Marie Tremblay-Franco, Jean-François Martin, Daniel Jacob, Sophie Goulitquer, Etienne A. Thévenot and Christophe Caron (2014). Workflow4Metabolomics: A collaborative research infrastructure for computational metabolomics. Bioinformatics doi:10.1093/bioinformatics/btu813