Mercurial > repos > lecorguille > xcms_summary
comparison xcms_summary.r @ 20:46be2c523a7f draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
author | lecorguille |
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date | Mon, 11 Feb 2019 06:14:10 -0500 |
parents | 97ca0321931b |
children | db6549f27ad1 |
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19:0cc47a5ebca9 | 20:46be2c523a7f |
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13 cat("\tSESSION INFO\n") | 13 cat("\tSESSION INFO\n") |
14 | 14 |
15 #Import the different functions | 15 #Import the different functions |
16 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } | 16 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } |
17 source_local("lib.r") | 17 source_local("lib.r") |
18 source_local("lib-xcms3.x.x.r") | |
19 | 18 |
20 pkgs <- c("CAMERA","batch") | 19 pkgs <- c("CAMERA","batch") |
21 loadAndDisplayPackages(pkgs) | 20 loadAndDisplayPackages(pkgs) |
22 cat("\n\n"); | 21 cat("\n\n"); |
23 | 22 |