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comparison test-data/faahKO.xset.group.retcor.group.fillpeaks.summary.html @ 15:97ca0321931b draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 9f72e947d9c241d11221cad561f3525d27231857
author lecorguille
date Tue, 18 Sep 2018 16:14:05 -0400
parents 27e7da5f6848
children
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14:4c757d1ba7b4 15:97ca0321931b
15 <div><h1>___ XCMS analysis summary using Workflow4Metabolomics ___</h1> 15 <div><h1>___ XCMS analysis summary using Workflow4Metabolomics ___</h1>
16 </div> 16 </div>
17 <h2>Samples used:</h2> 17 <h2>Samples used:</h2>
18 <div><table> 18 <div><table>
19 <tr><th>sample</th><th>filename</th><th>md5sum<sup>*</sup></th></tr> 19 <tr><th>sample</th><th>filename</th><th>md5sum<sup>*</sup></th></tr>
20 <tr> <td> ko15 </td> <td> faahKO_reduce/KO/ko15.CDF </td> <td> 4698c36c0b3af007faf70975c04ccf2a </td> </tr><tr> <td> ko16 </td> <td> faahKO_reduce/KO/ko16.CDF </td> <td> afaeed94ced3140bc042d5ab6aeb16c1 </td> </tr><tr> <td> wt15 </td> <td> faahKO_reduce/WT/wt15.CDF </td> <td> d58a27fad7c04ddddb0359ddc2b7ba68 </td> </tr><tr> <td> wt16 </td> <td> faahKO_reduce/WT/wt16.CDF </td> <td> 29654e9f8ad48c1fbe2a41b9ba578f6e </td> </tr> 20 <tr><td>ko15</td><td>faahKO_reduce/KO/ko15.CDF</td><td>4698c36c0b3af007faf70975c04ccf2a</td></tr><tr><td>ko16</td><td>faahKO_reduce/KO/ko16.CDF</td><td>afaeed94ced3140bc042d5ab6aeb16c1</td></tr><tr><td>wt15</td><td>faahKO_reduce/WT/wt15.CDF</td><td>d58a27fad7c04ddddb0359ddc2b7ba68</td></tr><tr><td>wt16</td><td>faahKO_reduce/WT/wt16.CDF</td><td>29654e9f8ad48c1fbe2a41b9ba578f6e</td></tr>
21 </table> 21 </table>
22 <br/><sup>*</sup>The program md5sum is designed to verify data integrity. So you can check if the data were uploaded correctly or if the data were changed during the process. 22 <br/><sup>*</sup>The program md5sum is designed to verify data integrity. So you can check if the data were uploaded correctly or if the data were changed during the process.
23 </div> 23 </div>
24 <h2>Function launched:</h2> 24 <h2>Function launched:</h2>
25 <div><table> 25 <div><table>
52 <tr><td>mzwid</td><td>0.01</td></tr> 52 <tr><td>mzwid</td><td>0.01</td></tr>
53 <tr><td>max</td><td>50</td></tr> 53 <tr><td>max</td><td>50</td></tr>
54 <tr><td rowspan='1'>160421-11:50:48</td><td rowspan='1'>fillPeaks</td> 54 <tr><td rowspan='1'>160421-11:50:48</td><td rowspan='1'>fillPeaks</td>
55 <td>method</td><td>chrom</td></tr> 55 <td>method</td><td>chrom</td></tr>
56 </table> 56 </table>
57 <br/><sup>***</sup>timestamp format: yymmdd-hh:mm:ss 57 <br/><sup>***</sup>timestamp format: DD MM dd hh:mm:ss YYYY or yymmdd-hh:mm:ss
58 </div> 58 </div>
59 <h2>Informations about the xcmsSet object:</h2> 59 <h2>Informations about the xcmsSet object:</h2>
60 <div><pre> 60 <div><pre>
61 An "xcmsSet" object with 4 samples 61 An "xcmsSet" object with 4 samples
62 62
64 Mass range: 200.1-600 m/z 64 Mass range: 200.1-600 m/z
65 Peaks: 32720 (about 8180 per sample) 65 Peaks: 32720 (about 8180 per sample)
66 Peak Groups: 8157 66 Peak Groups: 8157
67 Sample classes: KO, WT 67 Sample classes: KO, WT
68 68
69 Feature detection:
69 Profile settings: method = bin 70 Profile settings: method = bin
70 step = 0.1 71 step = 0.1
71 72
72 Memory usage: 4.25 MB 73 Memory usage: 4.25 MB
73 </pre></div> 74 </pre></div>