Mercurial > repos > lecorguille > xcms_summary

changeset 13:a5347d57899f draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:47:38 -0500
parents 27e7da5f6848
children 4c757d1ba7b4
files macros.xml xcms_summary.r
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Apr 07 07:37:23 2017 -0400
+++ b/macros.xml	Wed Nov 29 09:47:38 2017 -0500
@@ -19,7 +19,7 @@
     </xml>
 
     <token name="@COMMAND_XCMS_SCRIPT@">
-        LANG=C Rscript $__tool_directory__/xcms.r
+        LC_ALL=C Rscript $__tool_directory__/xcms.r
     </token>
 
     <token name="@COMMAND_LOG_EXIT@">
--- a/xcms_summary.r	Fri Apr 07 07:37:23 2017 -0400
+++ b/xcms_summary.r	Wed Nov 29 09:47:38 2017 -0500
@@ -98,8 +98,8 @@
             md5sumHeaderHtml = paste("<th>md5sum<sup>*</sup></th><th>md5sum<sup>**</sup> after bad characters removal</th>")
             md5sumHtml = paste("<td>",md5sumList$origin,"</td><td>",md5sumList$removalBadCharacters,"</td>")
             md5sumLegend = "<br/><sup>*</sup>The program md5sum is designed to verify data integrity. So you can check if the data were uploaded correctly or if the data were changed during the process.<br/><sup>**</sup>Because some bad characters (eg: accent) were removed from your original file, the checksum have changed too.<br/>"
-        } 
-        
+        }
+
         writehtml("<tr>",sampleNameHeaderHtml,"<th>filename</th>",md5sumHeaderHtml,"</tr>")
         writehtml(paste("<tr>",sampleNameHtml,"<td>",xset@filepaths,"</td>",md5sumHtml,"</tr>"))