Mercurial > repos > lecorguille > xcms_xcmsset
comparison test-data/xset.log.txt @ 0:054e4681667c draft
planemo upload
| author | lecorguille |
|---|---|
| date | Fri, 07 Aug 2015 10:49:35 -0400 |
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| -1:000000000000 | 0:054e4681667c |
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| 1 PACKAGE INFO | |
| 2 parallel 3.1.1 | |
| 3 BiocGenerics 0.12.1 | |
| 4 Biobase 2.26.0 | |
| 5 Rcpp 0.11.5 | |
| 6 mzR 2.0.0 | |
| 7 igraph 0.7.1 | |
| 8 xcms 1.42.0 | |
| 9 snow 0.3.13 | |
| 10 batch 1.1.4 | |
| 11 | |
| 12 | |
| 13 ARGUMENTS INFO | |
| 14 zipfile /w/galaxy/galaxy4metabolomics/galaxy-dist/database/files/041/dataset_41794.dat | |
| 15 xfunction xcmsSet | |
| 16 nSlaves 8 | |
| 17 method matchedFilter | |
| 18 step 0.01 | |
| 19 fwhm 4 | |
| 20 max 50 | |
| 21 snthresh 1 | |
| 22 steps 2 | |
| 23 | |
| 24 | |
| 25 INFILE PROCESSING INFO | |
| 26 | |
| 27 | |
| 28 MAIN PROCESSING INFO | |
| 29 Starting snow cluster with 8 local sockets. | |
| 30 Detecting features in file # 1 : HU_neg_028.mzXML | |
| 31 Detecting features in file # 2 : HU_neg_060.mzXML | |
| 32 Detecting features in file # 3 : HU_neg_051.mzXML | |
| 33 Detecting features in file # 4 : HU_neg_017.mzXML | |
| 34 Detecting features in file # 5 : HU_neg_034.mzXML | |
| 35 Detecting features in file # 6 : Blanc09.mzXML | |
| 36 Detecting features in file # 7 : Blanc06.mzXML | |
| 37 Detecting features in file # 8 : Blanc12.mzXML | |
| 38 Detecting features in file # 9 : Blanc04.mzXML | |
| 39 | |
| 40 | |
| 41 XSET OBJECT INFO | |
| 42 An "xcmsSet" object with 9 samples | |
| 43 | |
| 44 Time range: 0.7-1140 seconds (0-19 minutes) | |
| 45 Mass range: 50.0019-999.9863 m/z | |
| 46 Peaks: 135846 (about 15094 per sample) | |
| 47 Peak Groups: 0 | |
| 48 Sample classes: bio, blank | |
| 49 | |
| 50 Profile settings: method = bin | |
| 51 step = 0.01 | |
| 52 | |
| 53 Memory usage: 13.8 MB | |
| 54 | |
| 55 | |
| 56 DONE |