Mercurial > repos > lecorguille > xcms_xcmsset

comparison lib.r @ 23:5c62dfdb64f4 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4632d03b53c344757d71dd3310d37069fb498b26
author lecorguille
date Tue, 12 Mar 2019 10:59:28 -0400
parents 87df3692c68d
children 1de8423cd6a9
comparison
equal deleted inserted replaced
22:1f6fb923bc4a 23:5c62dfdb64f4
67 chromBPI_merged <- chromBPI 67 chromBPI_merged <- chromBPI
68 chromTIC_adjusted_merged <- chromTIC_adjusted 68 chromTIC_adjusted_merged <- chromTIC_adjusted
69 chromBPI_adjusted_merged <- chromBPI_adjusted 69 chromBPI_adjusted_merged <- chromBPI_adjusted
70 } else { 70 } else {
71 if (is(xdata, "XCMSnExp")) xdata_merged <- c(xdata_merged,xdata) 71 if (is(xdata, "XCMSnExp")) xdata_merged <- c(xdata_merged,xdata)
72 else if (is(xdata, "OnDiskMSnExp")) xdata_merged <- .concatenate_OnDiskMSnExp(xdata_merged,xdata) 72 else if (is(xdata, "OnDiskMSnExp")) xdata_merged <- xcms:::.concatenate_OnDiskMSnExp(xdata_merged,xdata)
73 else stop("\n\nERROR: The RData either a OnDiskMSnExp object called raw_data or a XCMSnExp object called xdata") 73 else stop("\n\nERROR: The RData either a OnDiskMSnExp object called raw_data or a XCMSnExp object called xdata")
74 74
75 singlefile_merged <- c(singlefile_merged,singlefile) 75 singlefile_merged <- c(singlefile_merged,singlefile)
76 md5sumList_merged$origin <- rbind(md5sumList_merged$origin,md5sumList$origin) 76 md5sumList_merged$origin <- rbind(md5sumList_merged$origin,md5sumList$origin)
77 sampleNamesList_merged$sampleNamesOrigin <- c(sampleNamesList_merged$sampleNamesOrigin,sampleNamesList$sampleNamesOrigin) 77 sampleNamesList_merged$sampleNamesOrigin <- c(sampleNamesList_merged$sampleNamesOrigin,sampleNamesList$sampleNamesOrigin)