comparison xcms_xcmsSet.r @ 21:87df3692c68d draft

planemo upload for repository https://github.com/workflow4metabolomics/xcms commit f0d42bca2f34c58c04b55e5990058d479c0ae639
author lecorguille
date Mon, 11 Feb 2019 05:51:25 -0500
parents b62808a2a008
children 9a0ca3f3a847
comparison
equal deleted inserted replaced
20:41cf6f56d1b6 21:87df3692c68d
10 cat("\tSESSION INFO\n") 10 cat("\tSESSION INFO\n")
11 11
12 #Import the different functions 12 #Import the different functions
13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) } 13 source_local <- function(fname){ argv <- commandArgs(trailingOnly=FALSE); base_dir <- dirname(substring(argv[grep("--file=", argv)], 8)); source(paste(base_dir, fname, sep="/")) }
14 source_local("lib.r") 14 source_local("lib.r")
15 source_local("lib-xcms3.x.x.r")
16 15
17 pkgs <- c("xcms","batch") 16 pkgs <- c("xcms","batch")
18 loadAndDisplayPackages(pkgs) 17 loadAndDisplayPackages(pkgs)
19 cat("\n\n"); 18 cat("\n\n");
20 19