Mercurial > repos > lecorguille > xcms_xcmsset
diff test-data/xset.log.txt @ 0:054e4681667c draft
planemo upload
| author | lecorguille |
|---|---|
| date | Fri, 07 Aug 2015 10:49:35 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/xset.log.txt Fri Aug 07 10:49:35 2015 -0400 @@ -0,0 +1,56 @@ + PACKAGE INFO +parallel 3.1.1 +BiocGenerics 0.12.1 +Biobase 2.26.0 +Rcpp 0.11.5 +mzR 2.0.0 +igraph 0.7.1 +xcms 1.42.0 +snow 0.3.13 +batch 1.1.4 + + + ARGUMENTS INFO +zipfile /w/galaxy/galaxy4metabolomics/galaxy-dist/database/files/041/dataset_41794.dat +xfunction xcmsSet +nSlaves 8 +method matchedFilter +step 0.01 +fwhm 4 +max 50 +snthresh 1 +steps 2 + + + INFILE PROCESSING INFO + + + MAIN PROCESSING INFO +Starting snow cluster with 8 local sockets. +Detecting features in file # 1 : HU_neg_028.mzXML +Detecting features in file # 2 : HU_neg_060.mzXML +Detecting features in file # 3 : HU_neg_051.mzXML +Detecting features in file # 4 : HU_neg_017.mzXML +Detecting features in file # 5 : HU_neg_034.mzXML +Detecting features in file # 6 : Blanc09.mzXML +Detecting features in file # 7 : Blanc06.mzXML +Detecting features in file # 8 : Blanc12.mzXML +Detecting features in file # 9 : Blanc04.mzXML + + + XSET OBJECT INFO +An "xcmsSet" object with 9 samples + +Time range: 0.7-1140 seconds (0-19 minutes) +Mass range: 50.0019-999.9863 m/z +Peaks: 135846 (about 15094 per sample) +Peak Groups: 0 +Sample classes: bio, blank + +Profile settings: method = bin + step = 0.01 + +Memory usage: 13.8 MB + + + DONE