Mercurial > repos > lecorguille > xcms_xcmsset
view planemo_test.sh @ 11:91311aa08cdc draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 08e7f269a5c59687a7768be8db5fcb4e4d736093
author | lecorguille |
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date | Mon, 30 Jan 2017 08:52:59 -0500 |
parents | 53923784176c |
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# Example of planemo command to launch test # -- Use of installed package environments # after having installing package on a local galaxy instance source /w/galaxy/dev/shed_tools_tool_dependency_dir/R/3.1.2/iuc/package_r_3_1_2/1ca39eb16186/env.sh source /w/galaxy/dev/shed_tools_tool_dependency_dir/bioconductor-xcms/1.44.0/lecorguille/package_bioconductor_xcms_1_44_0/0c38f7d43e08/env.sh planemo test --install_galaxy #All 2 test(s) executed passed. #abims_xcms_xcmsSet[0]: passed #abims_xcms_xcmsSet[1]: passed # -- Use of conda dependencies planemo conda_init --conda_prefix /tmp/mc planemo conda_install --conda_prefix /tmp/mc . planemo test --install_galaxy --conda_prefix /tmp/mc --conda_dependency_resolution #All 2 test(s) executed passed. #abims_xcms_xcmsSet[0]: passed #abims_xcms_xcmsSet[1]: passed # -- Use of shed_test planemo shed_test --install_galaxy -t testtoolshed #All 2 test(s) executed passed. #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_xcmsset/2.0.8[0]: passed #testtoolshed.g2.bx.psu.edu/repos/lecorguille/xcms_group/abims_xcms_xcmsset/2.0.8[1]: passed