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view job_conf.xml.sample @ 13:c934dd5c49a9 draft

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planemo upload for repository https://github.com/workflow4metabolomics/xcms commit 4897a06ef248e2e74e57a496dd68adbda3c828f1
author lecorguille
date Wed, 29 Nov 2017 09:45:19 -0500
parents 15646e937936
children b62808a2a008
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<?xml version="1.0"?>
<!-- A sample job config that explicitly configures job running the way it is configured by default (if there is no explicit config). -->
<job_conf>
    <plugins>
        <plugin id="sge" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" type="runner"/>
        <plugin id="dynamic" type="runner" >
            <param id="rules_module">galaxy.jobs.rules</param>
        </plugin>
    </plugins>
    <handlers>
        <handler id="main"/>
    </handlers>
    <destinations default="sge_default">
        <destination id="sge_default" runner="sge">
             <param id="nativeSpecification">-V -w n -q galaxy.q</param>
        </destination>

        <destination id="thread1-men_free10" runner="sge">
             <param id="nativeSpecification">-V -w n -q galaxy.q -pe thread 1 -R y -l mem_free=10G </param>
        </destination>
        <destination id="thread4-men_free10" runner="sge">
            <param id="nativeSpecification">-V -w n -q galaxy.q -pe thread 4 -R y -l mem_free=10G </param>
        </destination>

        <destination id="python_destination_input_type" runner="dynamic">
            <param id="type">python</param>
            <param id="function">input_type</param>
        </destination>
    </destinations>
    <tools>
        <tool destination="python_destination_input_type" id="abims_xcms_xcmsSet" />
    </tools>
</job_conf>