Mercurial > repos > lecorguille > xcms_xcmsset
changeset 25:1de8423cd6a9 draft
planemo upload for repository https://github.com/workflow4metabolomics/xcms commit a5136bfc124956893f4f0c91808d1c0d78c4ea01
author | lecorguille |
---|---|
date | Mon, 29 Apr 2019 06:20:42 -0400 |
parents | 9a0ca3f3a847 |
children | 9eebe9690ced |
files | lib.r |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/lib.r Tue Apr 09 12:12:48 2019 -0400 +++ b/lib.r Mon Apr 29 06:20:42 2019 -0400 @@ -333,7 +333,7 @@ files[exists] <- sub("//","/",files[exists]) # WHAT IS ON THE FILESYSTEM - filesystem_filepaths <- system(paste0("find \"$PWD/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) + filesystem_filepaths <- system(paste0("find \"",getwd(),"/",directory,"\" -not -name '\\.*' -not -path '*conda-env*' -type f -name \"*\""), intern=T) filesystem_filepaths <- filesystem_filepaths[grep(filepattern, filesystem_filepaths, perl=T)] # COMPARISON